Browse Element(s) Details


Os.53788.1.S1_at

Description gb:AK100045.1
DB_XREF= gi:32985254
TID=Os.53788.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153N14, full insert sequence.
FL= gb:AK100045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1043411/11Amidase family protein, expressed
LOC_Os06g160301/11Amidase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10410OsAffx.25959.1.S1_at11/114+5624937..5629621Amidase family protein, expressed
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein
LOC_Os04g10480OsAffx.13753.1.S1_at11/114+5680124..5680792hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53788.1.S1_at--565--9031Chr04:5655184..5655208 (25 bp)
TGCACTCGAGGGAGCTGTGATCCGT
LOC_Os04g10434
Os.53788.1.S1_at--1099--7391Chr04:5655200..5655224 (25 bp)
GTGATCCGTCAACTAAACGAGCTTT
LOC_Os04g10434
Os.53788.1.S1_at--969--5191Chr04:5655269..5655293 (25 bp)
GCAATTATCACTCCCAATGACCTAG
LOC_Os04g10434
Os.53788.1.S1_at--288--3011Chr04:5655284..5655308 (25 bp)
AATGACCTAGTTTCCACTGTTCTCG
LOC_Os04g10434
Os.53788.1.S1_at--852--5071Chr04:5655472..5655496 (25 bp)
GCACGGAACATTTTAGCAACATGGC
LOC_Os04g10434
Os.53788.1.S1_at--1153--8332Chr06:9123575..9123598 (24 bp)
GGCTGATCGTTTATCGCAACTACTA
LOC_Os06g16030
Os.53788.1.S1_at--319--3731Chr04:5655551..5655575 (25 bp)
CTACTATTGTTGAGCTTGGGAATGC
LOC_Os04g10434
Os.53788.1.S1_at--372--1331Chr04:5655633..5655657 (25 bp)
AGAGGTATCCCTCCAAACATTGTCT
LOC_Os04g10434
Os.53788.1.S1_at--144--3291Chr04:5655646..5655670 (25 bp)
CAAACATTGTCTCCGGACTCAGGTT
LOC_Os04g10434
Os.53788.1.S1_at--1145--6951Chr04:5655654..5655678 (25 bp)
GTCTCCGGACTCAGGTTGAAACCAC
LOC_Os04g10434
Os.53788.1.S1_at--553--1812Chr04:5655681..5655705 (25 bp)
ACCCATTGCCACTGTACTATCAAGT
LOC_Os04g10434
Target Sequence 
TGCACTCGAGGGAGCTGTGATCCGTCAACTAAACGAGCTTTCAGCTGACGGACTGGAGAAGCTGATGCAGGATGAGCAGC
TTGATGCAATTATCACTCCCAATGACCTAGTTTCCACTGTTCTCGCCATTGGCGGCATGCCGGCAATCACCGTACCAGCT
GGATACGGTAAGATGGGAGTCCCCTTCGGAATTTGCTTTGGTGGATTGAAGGGCTATGAGCCGAGGCTAATTGAGATGGC
TTATGCATTTGAGCAAGCTACCAAGGTCAGAAAGGCCCCTAAGTTCTTGCACGGAACATTTTAGCAACATGGCAGACATG
TTTTTAACTAGTAAAAAGTAATTCATTGGGCTGATCGTTTATCGCAACTACTATTGTTGAGCTTGGGAATGCAATTTAAA
ACACTGTTGCAGTGAAAACTTAGTGGATTGTGAAAAAAATATTGGAGGGAGAGGTATCCCTCCAAACATTGTCTCCGGAC
TCAGGTTGAAACCACACACCCATTGCCACTGTACTATCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis