Browse Element(s) Details


Os.5384.1.S1_at

Description gb:AK062356.1
DB_XREF= gi:32972374
TID=Os.5384.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G11, full insert sequence.
FL= gb:AK062356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g214009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21360NANA6+12332263..12336284Sodium/hydrogen exchanger family protein
LOC_Os06g21369Os.4620.1.S1_at11/116+12337888..12340181hypothetical protein
LOC_Os06g21380Os.11946.1.S1_at11/116+12344921..12349134carboxyl-terminal protease family protein, expressed
LOC_Os06g21390Os.26343.1.S1_at11/116+12351357..12357104Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g21400Os.5384.1.S1_at9/116+12358337..12359021hypothetical protein
LOC_Os06g21410OsAffx.27752.1.S1_s_at11/116+12365595..12367161expressed protein
LOC_Os06g21420Os.40855.2.S1_x_at10/116+12374748..12377078hypothetical protein
LOC_Os06g21420Os.40855.4.S1_x_at4/116+12374748..12377078hypothetical protein
LOC_Os06g21420Os.40855.4.S1_at1/116+12374748..12377078hypothetical protein
LOC_Os06g21420Os.40360.1.S1_x_at1/116+12374748..12377078hypothetical protein
LOC_Os06g21430Os.40855.2.S1_x_at9/116+12383026..12386358hypothetical protein
LOC_Os06g21430Os.40360.1.S1_at9/116+12383026..12386358hypothetical protein
LOC_Os06g21430Os.40360.1.S1_x_at6/116+12383026..12386358hypothetical protein
LOC_Os06g21430Os.40855.5.S1_x_at3/116+12383026..12386358hypothetical protein
LOC_Os06g21430Os.40855.4.S1_x_at2/116+12383026..12386358hypothetical protein
LOC_Os06g21430Os.40855.4.S1_at1/116+12383026..12386358hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5384.1.S1_at--620--8311Chr06:12359041..12359065 (25 bp)
GGCTACGTGCTACGTTTTTCTTCTT
NONE
Os.5384.1.S1_at--496--10551Chr06:12359015..12359039 (25 bp)
TTCTTCGTCGGGTTTACGATGGCTC
NONE
Os.5384.1.S1_at--550--3931Chr06:12358816..12358840 (25 bp)
CGGCGCTCATGCAGTAGACGACGAC
LOC_Os06g21400
Os.5384.1.S1_at--255--3811Chr06:12358760..12358784 (25 bp)
CTCCGGATTTGGTTGCGTCGATCGA
LOC_Os06g21400
Os.5384.1.S1_at--78--531Chr06:12358740..12358764 (25 bp)
ATCGAGCTGCGATCAAATCATGCAT
LOC_Os06g21400
Os.5384.1.S1_at--1032--9611Chr06:12358723..12358747 (25 bp)
TCATGCATAGTTGGTTTCTTTCTTC
LOC_Os06g21400
Os.5384.1.S1_at--1038--10411Chr06:12358697..12358721 (25 bp)
TTATTATAATTCCTTCTTCTTTGGG
LOC_Os06g21400
Os.5384.1.S1_at--760--8891Chr06:12358632..12358656 (25 bp)
TGAGTGGTTCTTGTGCTCTTGATCT
LOC_Os06g21400
Os.5384.1.S1_at--664--9091Chr06:12358619..12358643 (25 bp)
TGCTCTTGATCTCGCTGATGGACAT
LOC_Os06g21400
Os.5384.1.S1_at--1145--6231Chr06:12358603..12358627 (25 bp)
GATGGACATTCTTTTCTGTGTACCA
LOC_Os06g21400
Os.5384.1.S1_at--450--7431Chr06:12358586..12358610 (25 bp)
GTGTACCATTTCTGTACCTCATTAA
LOC_Os06g21400
Target Sequence 
GGCTACGTGCTACGTTTTTCTTCTTCTTCTTCGTCGGGTTTACGATGGCTCCCCGCGTGGCGGTGCTGCTGATGGCCGTG
GCCTCATCGCTCCTCGTGATGGCGTCGGCGCAGGAATTCAACGCGCCGGCCTCCTCGCCGGCGCCGTCGCCGATGGCCGG
GGCGGCGCCCGGGAGCGCGTCCCCGCTCGCCGTCGCGTCCTCCGCGCTCGTCACCCTGCTCGCGGCGGCGCTCATGCAGT
AGACGACGACGCGACGACTCCGGCTTCTCCCGCGCGCGTGGCTCCGGATTTGGTTGCGTCGATCGAGCTGCGATCAAATC
ATGCATAGTTGGTTTCTTTCTTCTTTATTATAATTCCTTCTTCTTTGGGGGNNAGAGAGAGAGAGATTATTGAGTGAGGG
TAGTTTGATGTTGAGTGGTTCTTGTGCTCTTGATCTCGCTGATGGACATTCTTTTCTGTGTACCATTTCTGTACCTCATT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis