Browse Element(s) Details


Os.53843.1.S1_at

Description gb:AK100362.1
DB_XREF= gi:32985571
TID=Os.53843.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083M12, full insert sequence.
FL= gb:AK100362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1872911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein
LOC_Os12g18700OsAffx.19734.1.S1_at9/1112+10804491..10806388expressed protein
LOC_Os12g18710OsAffx.7633.1.S1_at10/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.25317.1.S1_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.20972.1.S1_x_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein
LOC_Os12g18750OsAffx.2602.1.S1_at11/1112+10838903..10840765hypothetical protein
LOC_Os12g18750Os.5300.1.S1_at1/1112+10838903..10840765hypothetical protein
LOC_Os12g18760Os.7839.1.S1_at11/1112+10845644..10853690expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53843.1.S1_at--115--1371Chr12:10823422..10823446 (25 bp)
AGAGCTTTTTGTGCTCATTTTGACA
LOC_Os12g18729
Os.53843.1.S1_at--955--151Chr12:10823466..10823490 (25 bp)
ATTTATTTCGAGTACGTCCGTGTCG
LOC_Os12g18729
Os.53843.1.S1_at--707--7251Chr12:10823481..10823505 (25 bp)
GTCCGTGTCGTTAAGAATGTTCTAA
LOC_Os12g18729
Os.53843.1.S1_at--1116--8771Chr12:10823498..10823522 (25 bp)
TGTTCTAAGGATTTGGTACCCATTA
LOC_Os12g18729
Os.53843.1.S1_at--991--9871Chr12:10823521..10823545 (25 bp)
TATTTTCCTTACTGTAAATACGGCT
LOC_Os12g18729
Os.53843.1.S1_at--439--8291Chr12:10823542..10823566 (25 bp)
GGCTTTATCGTCAATACTGTTTCCA
LOC_Os12g18729
Os.53843.1.S1_at--1109--10351Chr12:10823585..10823609 (25 bp)
TTTTTCTCTCATCATAAGCAACTTT
LOC_Os12g18729
Os.53843.1.S1_at--346--9591Chr12:10823596..10823620 (25 bp)
TCATAAGCAACTTTTTATTCTCCTG
LOC_Os12g18729
Os.53843.1.S1_at--562--10351Chr12:10823609..10823633 (25 bp)
TTTATTCTCCTGTGACATTTGGAAT
LOC_Os12g18729
Os.53843.1.S1_at--633--3751Chr12:10823698..10823722 (25 bp)
CTCAGCACTTGCTTTAACATTGCAT
LOC_Os12g18729
Os.53843.1.S1_at--591--10371Chr12:10823917..10823941 (25 bp)
TTTTCAGATTTAGAGCAATGCATGG
LOC_Os12g18729
Target Sequence 
AGAGCTTTTTGTGCTCATTTTGACATTGATAATAAAATATCTCAATTTATTTCGAGTACGTCCGTGTCGTTAAGAATGTT
CTAAGGATTTGGTACCCATTATTTTCCTTACTGTAAATACGGCTTTATCGTCAATACTGTTTCCAAGGATTCTGTATTCA
TTTTTTTTCTCTCATCATAAGCAACTTTTTATTCTCCTGTGACATTTGGAATAAACAATAAGCAATTTGAGGAATAACAA
TCCAATAAGTATAAATATAAGCATTAATCATCCANACTCAGCACTTGCTTTAACATTGCATATTTACTTAAATCAAGTAA
AAGAATTAGTGTCATGCATCATCTCACTTAANAGTAATATCCNAGCCACATGAAAAGACTAAAATGCATACAAGCTAACA
TATCAACAAATATACATCAATTATTTTACTAGCATGCACAAGAATATACTAGAGGTATATACCAAAGCTCTTCTTTTTCT
CATTTTTTTNCTTTATTTTCAGATTTAGAGCAATGCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis