Browse Element(s) Details


Os.53848.1.S1_at

Description gb:AK100388.1
DB_XREF= gi:32985597
TID=Os.53848.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085N14, full insert sequence.
FL= gb:AK100388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0477010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04720Os.18466.1.S1_at11/1112+2009208..2010802expressed protein
LOC_Os12g04740Os.50782.1.S1_a_at11/1112+2011852..2015391expressed protein
LOC_Os12g04740Os.57104.1.S1_at11/1112+2011852..2015391expressed protein
LOC_Os12g04750Os.17839.1.A1_at11/1112+2016495..2021865expressed protein
LOC_Os12g04760OsAffx.31582.1.S1_at11/1112+2026019..2026433hypothetical protein
LOC_Os12g04770Os.53848.1.S1_at10/1112+2027660..2029698hypothetical protein
LOC_Os12g04790OsAffx.31583.1.S1_at11/1112+2040778..2044195expressed protein
LOC_Os12g04800OsAffx.828.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04800OsAffx.15503.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04810Os.27691.1.S1_x_at7/1112+2050022..2055918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04810Os.27691.2.S1_x_at5/1112+2050022..2055918retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53848.1.S1_at--931--4911Chr12:2029194..2029218 (25 bp)
GCTTCCTGTTGGCAGCTATCGGGAA
LOC_Os12g04770
Os.53848.1.S1_at--325--3131Chr12:2029225..2029249 (25 bp)
AATTTTATTCGCCAGATGCCTTGCG
LOC_Os12g04770
Os.53848.1.S1_at--215--4031Chr12:2029304..2029328 (25 bp)
CGAGTGGTGTTACCCCGGACAATAT
LOC_Os12g04770
Os.53848.1.S1_at--538--1471Chr12:2029367..2029391 (25 bp)
AGAAGGCATCAGTGCGTCCGGTTGA
LOC_Os12g04770
Os.53848.1.S1_at--98--4631Chr12:2029380..2029404 (25 bp)
GCGTCCGGTTGAGCTGATTGAACAT
LOC_Os12g04770
Os.53848.1.S1_at--849--6531Chr12:2029408..2029432 (25 bp)
GATTTTAATCCATTGTCGTCGCGTC
LOC_Os12g04770
Os.53848.1.S1_at--898--9331Chr12:2029426..2029450 (25 bp)
TCGCGTCCGTGGCATGAAGAATATC
LOC_Os12g04770
Os.53848.1.S1_at--456--911Chr12:2029479..2029503 (25 bp)
AGGCTTTCAGGACGTGGTACCTCAG
LOC_Os12g04770
Os.53848.1.S1_at--600--1751Chr12:2029497..2029521 (25 bp)
ACCTCAGATCGTACTGTGGAACCTT
LOC_Os12g04770
Os.53848.1.S1_at--474--4811Chr12:2029532..2029556 (25 bp)
GCTCTGCAGGCTTAACCGCAACTAA
LOC_Os12g04770
Os.53848.1.S1_at--1002--6411Chr12:2029741..2029765 (25 bp)
GATCTATGTTTATCCTGACTCAGTA
NONE
Target Sequence 
GCTTCCTGTTGGCAGCTATCGGGAAAAGTTGAATTTTATTCGCCAGATGCCTTGCGAAGAGAGGTTTAACCTAAAGAAGG
TGTTTGAGGGGATAATTACAAGGGCAGTAACGAGTGGTGTTACCCCGGACAATATGGTGAAGACCATATTCATATTCACA
GACAAGTTTTTTGAGAAGGCATCAGTGCGTCCGGTTGAGCTGATTGAACATGAAGATTTTAATCCATTGTCGTCGCGTCC
GTGGCATGAAGAATATCGGAGGGTGTGCGAAGAATTCAAGAGGGTAGGCTTTCAGGACGTGGTACCTCAGATCGTACTGT
GGAACCTTAAGGGGCCACGCTCTGCAGGCTTAACCGCAACTAAGGATGGAGTCATGACACTTAGTGGATACTCGGATGAG
TTGATGAGATTGTTTCTTGAGAACAATGGGGTGGTGGAGCCGGAAGATGAGATGCTTGATGCAATTGCTGGGGACGAGTA
CCAGAAACTTCAAGTGATTGATTAGGATAACTGGTCTAGAGGTTTGAGATTATATGAGTGACTAGGAGATCTATGTTTAT
CCTGACTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis