Browse Element(s) Details


Os.53872.1.S1_at

Description gb:AK100537.1
DB_XREF= gi:32985746
TID=Os.53872.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101O07, full insert sequence.
FL= gb:AK100537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4436011/11Plasma membrane Na+/H+ antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44370Os.16279.1.S1_at11/1112+27479011..27480174expressed protein
LOC_Os12g44380Os.26353.1.S1_at11/1112+27480325..27484463sucrose/H+ symporter family protein, expressed
LOC_Os12g44390Os.8335.2.S1_at11/1112+27491340..27496040RecF/RecN/SMC N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0015081molecular_functionsodium ion transporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53872.1.S1_at--154--8951Chr12:27471306..27471330 (25 bp)
TGACATGTGCTACCCATAATTCCTT
LOC_Os12g44360
Os.53872.1.S1_at--196--311Chr12:27471280..27471304 (25 bp)
ATAGCTGTTCTGTTTCCTTTTGCTA
LOC_Os12g44360
Os.53872.1.S1_at--221--191Chr12:27471202..27471226 (25 bp)
ATTTAACGCTGCATGCGGTGGCGGA
LOC_Os12g44360
Os.53872.1.S1_at--518--2551Chr12:27471170..27471194 (25 bp)
AACTGCTCAGGGTTGCTGGGCCTTG
LOC_Os12g44360
Os.53872.1.S1_at--466--2271Chr12:27471032..27471056 (25 bp)
AAATCCCTCGAGTGGCATGCAACTT
LOC_Os12g44360
Os.53872.1.S1_at--505--2231Chr12:27470988..27471012 (25 bp)
AAATTACACCCCATTATGCAGTCCA
LOC_Os12g44360
Os.53872.1.S1_at--1056--5011Chr12:27470971..27470995 (25 bp)
GCAGTCCATTACTCATTTGGCCATA
LOC_Os12g44360
Os.53872.1.S1_at--543--10111Chr12:27470910..27470934 (25 bp)
TATGTTGCGGTCCTGAACTTTTCTT
LOC_Os12g44360
Os.53872.1.S1_at--862--10771Chr12:27470874..27470898 (25 bp)
TTGTTTCCTCTTTTTTAGCCCTGTG
LOC_Os12g44360
Os.53872.1.S1_at--791--9991Chr12:27470859..27470883 (25 bp)
TAGCCCTGTGCTGAACTTCTATGAA
LOC_Os12g44360
Os.53872.1.S1_at--823--1991Chr12:27470834..27470858 (25 bp)
ACTCCTGTAAAAATCGTCTGCGTTT
LOC_Os12g44360
Target Sequence 
TGACATGTGCTACCCATAATTCCTTTATAGCTGTTCTGTTTCCTTTTGCTAGTTGTGTATTTTGGTTGGCTAATCTAGGA
GGCTAATGAGTAACTAAATACAAAATTTAACGCTGCATGCGGTGGCGGAGCCCGGCAACTGCTCAGGGTTGCTGGGCCTT
GGCTCCGCTGCTGTTTTTTCTGGTTGCACCAAAACAATGTTAGTAAGAAATCTGCAGCAAAATGAGATGTAAATCCAATT
TATAAGTGGAAGACCAACAAGAAAGCAGATTAGAAAATCCCTCGAGTGGCATGCAACTTAATTCACTGCTCTAAGACCAA
ATTACACCCCATTATGCAGTCCATTACTCATTTGGCCATAAGATACAACCCAGGATATGTCCTAGTGGCTAATGGATATG
TTGCGGTCCTGAACTTTTCTTTTCTTTTCCTTTTGTTTCCTCTTTTTTAGCCCTGTGCTGAACTTCTATGAAACTCCTGT
AAAAATCGTCTGCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis