Browse Element(s) Details


Os.53875.1.S1_at

Description gb:AK100557.1
DB_XREF= gi:32985766
TID=Os.53875.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104C08, full insert sequence.
FL= gb:AK100557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g195107/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19450OsAffx.32056.1.S1_x_at7/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.3.S1_s_at6/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.4.S1_s_at5/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.1.S1_s_at3/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.32056.1.S1_at2/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19460NANA9+11647556..11647918hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_x_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19480OsAffx.17782.1.S1_at11/119+11660025..11660862hypothetical protein
LOC_Os09g19490OsAffx.29924.1.S1_at11/119+11661543..11661995hypothetical protein
LOC_Os09g19500OsAffx.17783.1.S1_s_at11/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19500OsAffx.17783.1.S1_at9/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19510Os.53875.1.S1_at7/119+11670312..11675422Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19520Os.24942.4.A1_x_at6/119+11679927..11680334hypothetical protein
LOC_Os09g19520Os.24942.4.A1_at2/119+11679927..11680334hypothetical protein
LOC_Os09g19530NANA9+11682894..11689049transposon protein, putative, unclassified
LOC_Os09g19540NANA9+11689688..11692924transposon protein, putative, unclassified
LOC_Os09g19550OsAffx.29925.1.S1_at11/119+11699471..11701661SNARE domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53875.1.S1_at--1120--3331Chr09:11674835..11674859 (25 bp)
CACGGCCGCTGGATCAATGGGCTAT
LOC_Os09g19510
Os.53875.1.S1_at--495--6911Chr09:11675126..11675150 (25 bp)
GTAGTCACGGGTGAGCGTCCGATAA
LOC_Os09g19510
Os.53875.1.S1_at--985--7551Chr09:11675161..11675185 (25 bp)
GGGCCACATCATCCAACGTATAAAA
LOC_Os09g19510
Os.53875.1.S1_at--476--1251Chr09:11675191..11675215 (25 bp)
AGTTGTGGCGGGTGACATCAGCTCC
LOC_Os09g19510
Os.53875.1.S1_at--697--6211Chr09:11675235..11675259 (25 bp)
GAGGCGACTACGATGTCAACTCCAT
LOC_Os09g19510
Os.53875.1.S1_at--699--8111Chr09:11675347..11675371 (25 bp)
GGACAGTTTAGTGCCAGATCCACCA
LOC_Os09g19510
Os.53875.1.S1_at--619--751Chr09:11675390..11675414 (25 bp)
ATGTCGCCTACATTTGGTCCGTCGG
LOC_Os09g19510
Os.53875.1.S1_at--417--6991Chr09:11675430..11675454 (25 bp)
GTACGCCTGTACCTCTATATATACC
NONE
Os.53875.1.S1_at--918--10191Chr09:11675447..11675471 (25 bp)
TATATACCTGCCTTCGGTGCATCTA
NONE
Os.53875.1.S1_at--141--7331Chr09:11675463..11675487 (25 bp)
GTGCATCTAGATGGTCTCTCAATAA
NONE
Os.53875.1.S1_at--745--5251Chr09:11675503..11675527 (25 bp)
GAATCCTAGCTATACATGTCGAGAA
NONE
Target Sequence 
CACGGCCGCTGGATCAATGGGCTATATTGACCCAGAGTACTATCTAACTGGTAGAATTACGGAGAGCAGTGATATTTACA
GCTTCGGTGTTGTTCTTTTAGAGGTAGTCACGGGTGAGCGTCCGATAATACAAGGCCAGGGCCACATCATCCAACGTATA
AAAATGAAAGTTGTGGCGGGTGACATCAGCTCCATTGCTGATGCGCGGCTCAGAGGCGACTACGATGTCAACTCCATATG
GAAGGTGGTGGAAATTGCCATGCTGTGCACAGAACCTGTCGCTGCTCAAAGGCCAACGATGGCAAGCGTGGTTGCAGAAC
TGAAGGACAGTTTAGTGCCAGATCCACCACCACATCATGCCGTCGCTATGTCGCCTACATTTGGTCCGTCGGCAAGATGA
AGAAGCTGTACGCCTGTACCTCTATATATACCTGCCTTCGGTGCATCTAGATGGTCTCTCAATAATGGGGCATGATGCAT
GAATCCTAGCTATACATGTCGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis