Browse Element(s) Details


Os.5388.1.S1_at

Description gb:AK073818.1
DB_XREF= gi:32983841
TID=Os.5388.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068O06, full insert sequence.
FL= gb:AK073818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4294010/11VAP27, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed
LOC_Os02g42950Os.54793.1.S1_at11/112+25833450..25836836yabby15 protein, putative, expressed
LOC_Os02g42960Os.27679.1.A1_at11/112+25849743..25853160expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5388.1.S1_at--500--5531NONE
GAAACAGTAACCTCTGAGCCATTGG
NONE
Os.5388.1.S1_at--125--5872Chr10:3915508..3915531 (24 bp)
GAGCCATTGGCCTTGATTTCAAAGT
NONE
Os.5388.1.S1_at--501--7732Chr10:3916090..3916114 (25 bp)
GGTGGTTTCTCACTAGTTTTTGTGC
NONE
Os.5388.1.S1_at--354--111Chr02:25822876..25822900 (25 bp)
ATTCTGGGAATCCTGCTTGGTTTTC
LOC_Os02g42940
Os.5388.1.S1_at--756--233Chr10:3916177..3916202 (25 bp)
ATATATCTTGTTCCACTTTTCTGTG
NONE
Os.5388.1.S1_at--297--4312Chr10:3916224..3916247 (24 bp)
CCTTGTCTGTTGTGTTAGCCATTTG
NONE
Os.5388.1.S1_at--569--192Chr10:3916243..3916267 (25 bp)
ATTTGTACCAACTCATGATCGTCTT
NONE
Os.5388.1.S1_at--918--6392Chr10:3916259..3916283 (25 bp)
GATCGTCTTATCTTAGGACCTGATT
NONE
Os.5388.1.S1_at--207--411Chr02:25822689..25822713 (25 bp)
ATCAGTAGCTACTGCATCCAGTCAA
LOC_Os02g42940
Os.5388.1.S1_at--924--9771Chr02:25822664..25822688 (25 bp)
TAAGTCGTCTGTCCATTTAGCATGT
LOC_Os02g42940
Os.5388.1.S1_at--389--6892Chr10:3916451..3916475 (25 bp)
GTATATGCTGGATCCTTGTGAATCT
NONE
Target Sequence 
GAAACAGTAACCTCTGAGCCATTGGCCTTGATTTCAAAGTTGAAGGAGGAGAAGAGTTCTGCCATTCAACAGAACATGAA
GCTTCGAGAAGAACTGGATCTTCTAAGGAGGCAAATGGGGAGTCAGCACNGGTGGTTTCTCACTAGTTTTTGTGCTGGTT
ATTGCTATTCTGGGAATCCTGCTTGGTTTTCTCATTAAGAGATGAGCGTCTGTGATCATATATCTTGTTCCACTTTTCTG
TGAAAGAGTTGATAGTCGTGGGCCTTGTCTGTTGTGTTAGCCATTTGTACCAACTCATGATCGTCTTATCTTAGGACCTG
ATTCCTCNTTGTAATTTCTGACTATCAAATTCCAATCAGTAGCTACTGCATCCAGTCAATAAGTCGTCTGTCCATTTAGC
ATGTTTGAGTATAAGTTTTTTTTGGTCAATTGTATTCATCTTTTGACACCTGTAAATATGACACTTCCCTTNAACATTAT
GGCTTGCGATATGTATATGCTGGATCCTTGTGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis