Browse Element(s) Details


Os.5396.1.S1_a_at

Description gb:AK073390.1
DB_XREF= gi:32983413
TID=Os.5396.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040M05, full insert sequence.
FL= gb:AK073390.1 gb:AK061916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3541011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35380Os.18430.1.S1_at11/114+21326088..21331515expressed protein
LOC_Os04g35390OsAffx.14153.1.S1_at9/114+21338148..21339315hypothetical protein
LOC_Os04g35410Os.5396.1.S1_a_at11/114+21352075..21356188expressed protein
LOC_Os04g35420OsAffx.14155.1.S1_at11/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g35420Os.18695.1.S1_at1/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g35430OsAffx.14156.1.S1_at11/114+21372010..21378606PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5396.1.S1_a_at--1133--8571Chr04:21352589..21352613 (25 bp)
TGGTCGAGACGCTCTACCATGCGGA
LOC_Os04g35410
Os.5396.1.S1_a_at--1144--5791Chr04:21352555..21352579 (25 bp)
GACCGAGGACTACATTCTGGACCTG
LOC_Os04g35410
Os.5396.1.S1_a_at--202--8531Chr04:21352538..21352562 (25 bp)
TGGACCTGGTTGTCTGGCTTCACCA
LOC_Os04g35410
Os.5396.1.S1_a_at--474--10811Chr04:21352511..21352535 (25 bp)
TTGTCAACCAGAGTAACCGGCCGGC
LOC_Os04g35410
Os.5396.1.S1_a_at--329--8691Chr04:21352340..21352364 (25 bp)
TGTGACCTGTCCGATTGTTTGATGT
LOC_Os04g35410
Os.5396.1.S1_a_at--723--8291Chr04:21352283..21352307 (25 bp)
GGCTTCTTGCTGTTGTCCTAAAACT
LOC_Os04g35410
Os.5396.1.S1_a_at--600--4111Chr04:21352268..21352292 (25 bp)
TCCTAAAACTTGTGGTGGCGACGTG
LOC_Os04g35410
Os.5396.1.S1_a_at--1057--591Chr04:21352240..21352264 (25 bp)
ATGCGTTGCGCTCTGTACATGTACA
LOC_Os04g35410
Os.5396.1.S1_a_at--1141--10371Chr04:21352178..21352202 (25 bp)
TTTTCTCTCCGATTATTTGGTCGTT
LOC_Os04g35410
Os.5396.1.S1_a_at--389--3131Chr04:21352137..21352161 (25 bp)
AATTTCATTGTTGCAGCCATTCGGT
LOC_Os04g35410
Os.5396.1.S1_a_at--60--4451Chr04:21352122..21352146 (25 bp)
GCCATTCGGTTGTCACATGTTGTAC
LOC_Os04g35410
Target Sequence 
TGGTCGAGACGCTCTACCATGCGGACAAGGCGAAGACCGAGGACTACATTCTGGACCTGGTTGTCTGGCTTCACCACCTT
GTCAACCAGAGTAACCGGCCGGCAAATGCAAAAGACAAAGACAAAGAGCAGTCCACCTCACCTCTAACCAAATCTGATCT
TGACAAGGCACAACAAGAATAGCACTGCACTGCACTGCACTGCACCGCACTGCACAGCAGCCGACAAGAGCAAAACACCA
GACGACGCCTGTGACCTGTCCGATTGTTTGATGTGGGCATTGTTTGTAGGTTGTAAATGGAAGCTAGGCTTCTTGCTGTT
GTCCTAAAACTTGTGGTGGCGACGTGGGCATGCGTTGCGCTCTGTACATGTACATCAGTCAAGTAGGTAGTAGAAATGAG
GAGCCTTTTTTTTTTCTCTCCGATTATTTGGTCGTTACAGAGAGGGTTCTATAATTTCATTGTTGCAGCCATTCGGTTGT
CACATGTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5396.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis