Browse Element(s) Details


Os.53994.1.S1_at

Description gb:AK101531.1
DB_XREF= gi:32986740
TID=Os.53994.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048A09, full insert sequence.
FL= gb:AK101190.1 gb:AK101531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4638011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein
LOC_Os05g46420Os.5372.1.S1_at11/115+26816857..26818265expressed protein
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53994.1.S1_at--145--32Chr05:26803475..26803499 (25 bp)
ATTGTGAGGCAACAACACCGTTGGT
LOC_Os05g46380
Os.53994.1.S1_at--388--3131Chr05:26803543..26803567 (25 bp)
AATTTCTTGCTCAGCAACTCCAGTT
LOC_Os05g46380
Os.53994.1.S1_at--89--7411Chr05:26803582..26803606 (25 bp)
GTGATCTCTCATGTTTTGTATCCAA
LOC_Os05g46380
Os.53994.1.S1_at--718--6791Chr05:26803614..26803638 (25 bp)
GTTATCAGACCTAGTAACCTCAGGA
LOC_Os05g46380
Os.53994.1.S1_at--436--2631Chr05:26803629..26803653 (25 bp)
AACCTCAGGAGGCTTTTGACCGCTG
LOC_Os05g46380
Os.53994.1.S1_at--863--4771Chr05:26803650..26803674 (25 bp)
GCTGCTGTGTCTTTTTACCATGGAT
LOC_Os05g46380
Os.53994.1.S1_at--440--1731Chr05:26803666..26803690 (25 bp)
ACCATGGATGCCTAGAGAGTCTCTT
LOC_Os05g46380
Os.53994.1.S1_at--326--3631Chr05:26803707..26803731 (25 bp)
CTTGAAGTTGGCATGCTCAGCTAAT
LOC_Os05g46380
Os.53994.1.S1_at--1154--9371Chr05:26803802..26803826 (25 bp)
TCGATGGTACTGTAGCTTGTTGCTT
LOC_Os05g46380
Os.53994.1.S1_at--885--1671Chr05:26803861..26803885 (25 bp)
AGCCTGGGAGATGACTACTGATGCA
LOC_Os05g46380
Os.53994.1.S1_at--341--8611Chr05:26803942..26803966 (25 bp)
TGGGAAAGCCTTCTCATCTATACTT
LOC_Os05g46380
Target Sequence 
ATTGTGAGGCAACAACACCGTTGGTGTGATGAGGAGAGAGCAAAAATACTGGATCAGCTTGCTGATAAAATTTCTTGCTC
AGCAACTCCAGTTCAAGTATTTCTTGAGTGATCTCTCATGTTTTGTATCCAAAGCTTAAGTTATCAGACCTAGTAACCTC
AGGAGGCTTTTGACCGCTGCTGTGTCTTTTTACCATGGATGCCTAGAGAGTCTCTTGAATCCATATTGCCCCCTTGAAGT
TGGCATGCTCAGCTAATAGAGTTGATGATAGTAGGATCTGAGGGAACAGAAAGACTGTTTTAGTTTGTTAATTTTGTAGT
AGAAGTATCGATGGTACTGTAGCTTGTTGCTTTGTTAAAAAGTGAGCATGTATACATGGTTCATAGAGCCTGGGAGATGA
CTACTGATGCAGCAATACCAGATTTCTGATAGAATTTAGTGCTCAATTACTCTAATTCAAGTAGTTTTGGGAAAGCCTTC
TCATCTATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis