Browse Element(s) Details


Os.54015.1.S1_at

Description gb:AK101294.1
DB_XREF= gi:32986503
TID=Os.54015.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54015 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033G24, full insert sequence.
FL= gb:AK101294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3223011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os12g417501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein
LOC_Os02g32280OsAffx.24534.1.S1_at11/112+19053005..19057488expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54015.1.S1_at--96--7612Chr02:19030798..19030822 (25 bp)
GGGCAAATTTTGCTACTCTGCACTT
LOC_Os02g32230
Os.54015.1.S1_at--720--5111Chr02:19030817..19030841 (25 bp)
GCACTTTGTGGGTAATGCTGCACTG
LOC_Os02g32230
Os.54015.1.S1_at--137--631Chr02:19030831..19030855 (25 bp)
ATGCTGCACTGTGGTTGCAAACTTA
LOC_Os02g32230
Os.54015.1.S1_at--720--5691Chr02:19030875..19030899 (25 bp)
GAGACTTGGCCTGAACTTTGTGTAG
LOC_Os02g32230
Os.54015.1.S1_at--190--7491Chr02:19031070..19031094 (25 bp)
GTGGGTGGCCTTAAAACTGAAATCA
LOC_Os02g32230
Os.54015.1.S1_at--854--2631Chr02:19031116..19031140 (25 bp)
AACCTAGAACTGTTGATGCGGCTTT
LOC_Os02g32230
Os.54015.1.S1_at--611--611Chr02:19031131..19031155 (25 bp)
ATGCGGCTTTGTCTCTTGCTAAAAC
LOC_Os02g32230
Os.54015.1.S1_at--460--3271Chr02:19031224..19031248 (25 bp)
CAACAGCTTTCAGGGTAAACTACCA
LOC_Os02g32230
Os.54015.1.S1_at--994--1011Chr02:19031255..19031279 (25 bp)
AGGTATACTGGGACAAGCTCCTGAT
LOC_Os02g32230
Os.54015.1.S1_at--363--7651Chr02:19031311..19031335 (25 bp)
GGGAGGATTGCTTTGAGTCTCTCAA
LOC_Os02g32230
Os.54015.1.S1_at--322--10771Chr02:19031323..19031347 (25 bp)
TTGAGTCTCTCAAGGCTGCCAGAAA
LOC_Os02g32230
Target Sequence 
GGGCAAATTTTGCTACTCTGCACTTTGTGGGTAATGCTGCACTGTGGTTGCAAACTTATGAGGCTTTGCATAGTGTTGAG
ACTTGGCCTGAACTTTGTGTAGTAGTGCATAATAAGTTTGGGAAAGATAAATATCAGGAGCACTTAGAGGAGTTAGAGAG
TCTTAGGCAAACCAGTGGGGTTGATGCATATTATAGCAAATTTGAGGAGTTGATGCACAGAGTCTTAGTGTATAATCAGG
CTTTTGATGAGACATATTTTGTTACCAAATTTGTGGGTGGCCTTAAAACTGAAATCAAAGCAGCAATCAAGCTGCATAAA
CCTAGAACTGTTGATGCGGCTTTGTCTCTTGCTAAAACGCAGGAAGATTTGGCGTTGGAGATAAAGAAAGGAGGTCAGAA
GTCCACTTATAAGGAAGGATTTAAATCAACAGCTTTCAGGGTAAACTACCAAGGCAAAGGTATACTGGGACAAGCTCCTG
ATGACACCACCAAGACAGAAGAAAAGCCAAAGTGGGAGGATTGCTTTGAGTCTCTCAAGGCTGCCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis