Browse Element(s) Details


Os.54021.1.S1_at

Description gb:AK101369.1
DB_XREF= gi:32986578
TID=Os.54021.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035M16, full insert sequence.
FL= gb:AK101369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0289011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02850Os.26571.1.S1_at10/113+1098132..1102122tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g02860Os.20163.1.S1_at11/113+1103313..1105401copper chaperone, putative, expressed
LOC_Os03g02870NANA3+1110205..1111709hypothetical protein
LOC_Os03g02890Os.54021.1.S1_at11/113+1115474..1119407expressed protein
LOC_Os03g02900Os.31989.1.S1_at11/113+1131263..1133042B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54021.1.S1_at--473--1971Chr03:1118764..1118788 (25 bp)
ACTGATGTTGATACTGCTGCACCTT
LOC_Os03g02890
Os.54021.1.S1_at--189--3851Chr03:1118780..1118804 (25 bp)
CTGCACCTTTCTATTCGTTTGTTAA
LOC_Os03g02890
Os.54021.1.S1_at--93--8671Chr03:1118799..1118823 (25 bp)
TGTTAAACGTTTATCGGGCTCTTCA
LOC_Os03g02890
Os.54021.1.S1_at--1014--1571Chr03:1118824..1118848 (25 bp)
AGCTCATCGGATGTGGACTTTGACA
LOC_Os03g02890
Os.54021.1.S1_at--672--5811Chr03:1118948..1118969 (22 bp)
GACCCACTAATCAATGCCAAGCAGC
LOC_Os03g02890
Os.54021.1.S1_at--602--5371Chr03:1119119..1119143 (25 bp)
GAAGACTTCTCTTCATCCATAAAGT
LOC_Os03g02890
Os.54021.1.S1_at--1076--351Chr03:1119234..1119258 (25 bp)
ATAATTTGCTGGATCAACCGTCGGG
LOC_Os03g02890
Os.54021.1.S1_at--245--7671Chr03:1119257..1119281 (25 bp)
GGGTTGGTCACTTGAACTGAACTTC
LOC_Os03g02890
Os.54021.1.S1_at--30--5491Chr03:1119275..1119299 (25 bp)
GAACTTCAACAACTCGTGCTACTTA
LOC_Os03g02890
Os.54021.1.S1_at--46--7331Chr03:1119290..1119314 (25 bp)
GTGCTACTTATGAGCTTCTGTGTAA
LOC_Os03g02890
Os.54021.1.S1_at--240--6271Chr03:1119319..1119343 (25 bp)
GATGTGTGCCCTATTGATTCTTATG
LOC_Os03g02890
Target Sequence 
ACTGATGTTGATACTGCTGCACCTTTCTATTCGTTTGTTAAACGTTTATCGGGCTCTTCAAGCTCATCGGATGTGGACTT
TGACAAGTTTCTATCTAGTATTAAAAAGCAGACTGATGTTACTGTTATGGCTAGGCACAAAGATTTCGTGTGCGATAAGG
GTAATATAAGATCATTAGATGACCCACTAATCAATGCCAAGCAGCAAGTAATACGAAGCAGCTCGAAGATGATGCTTTAA
GGTTTTTCCAATCCTTGAAAATTCCGGAGGGGATACCAGAAGATCATTCAGACGATGGGTCATCAGACTCAGATTATTAT
CAAACAGAACATTATCCATTACGGGTTGAACCAGGAAGACTTCTCTTCATCCATAAAGTCCTTGGAAGTGGAAAGGAATG
GTGACATAATTTGCTGGATCAACCGTCGGGGTTGGTCACTTGAACTGAACTTCAACAACTCGTGCTACTTATGAGCTTCT
GTGTAAATGTGATGTGTGCCCTATTGATTCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis