Browse Element(s) Details


Os.54043.1.S1_at

Description gb:AK101465.1
DB_XREF= gi:32986674
TID=Os.54043.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040I01, full insert sequence.
FL= gb:AK101465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1671011/11F-box domain containing protein, expressed
LOC_Os08g166901/11hypothetical protein
LOC_Os08g167401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16690OsAffx.5844.1.S1_at10/118+10201181..10202956hypothetical protein
LOC_Os08g16690Os.54043.1.S1_at1/118+10201181..10202956hypothetical protein
LOC_Os08g16700OsAffx.5845.1.S1_at11/118+10206743..10207506hypothetical protein
LOC_Os08g16710Os.54043.1.S1_at11/118+10211422..10214225F-box domain containing protein, expressed
LOC_Os08g16720Os.18628.1.S1_at11/118+10215452..10216473transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g16730NANA8+10221180..10221476hypothetical protein
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein
LOC_Os08g16750OsAffx.5846.1.S1_at11/118+10238964..10239264hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54043.1.S1_at--323--1651Chr08:10211905..10211929 (25 bp)
AGCGACTTGCTTGCAAGCCTCAAAT
LOC_Os08g16710
Os.54043.1.S1_at--1134--4451Chr08:10211889..10211913 (25 bp)
GCCTCAAATATGTGACCCTGATTAA
LOC_Os08g16710
Os.54043.1.S1_at--217--10351Chr08:10211825..10211849 (25 bp)
TTTACTGTCCAAAGCGAGATCTCTT
LOC_Os08g16710
Os.54043.1.S1_at--881--1891Chr08:10211790..10211814 (25 bp)
ACGTCACTTTCGTCTACAGTTATGA
LOC_Os08g16710
Os.54043.1.S1_at--326--5651Chr08:10211662..10211686 (25 bp)
GACAGACATCCTGTCCTTGTTGATG
LOC_Os08g16710
Os.54043.1.S1_at--108--3631Chr08:10211647..10211671 (25 bp)
CTTGTTGATGTTGCCTTCGTATTAT
LOC_Os08g16710
Os.54043.1.S1_at--1105--5573Chr08:10228376..10228396 (21 bp)
GAAATACTTCGGAACTTGCTACTGT
LOC_Os08g16740
Os.54043.1.S1_at--719--1291Chr08:10211584..10211608 (25 bp)
AGATGAGGCTGTTCTTGGGCAACCA
LOC_Os08g16710
Os.54043.1.S1_at--135--1611Chr08:10211560..10211584 (25 bp)
AGCTGCTTGTTTTCCTTCTTGAGAA
LOC_Os08g16710
Os.54043.1.S1_at--364--10251Chr08:10211487..10211511 (25 bp)
TTTGTGAAACACTACGATTACTCGA
LOC_Os08g16710
Os.54043.1.S1_at--27--2191Chr08:10211455..10211479 (25 bp)
ACACTGATATAGCATGTGGCGGTAT
LOC_Os08g16710
Target Sequence 
AGCGACTTGCTTGCAAGCCTCAAATATGTGACCCTGATTAATATGAAGTACAACTCAAATCAAATGTGCTTTATGAAGCT
TTTACTGTCCAAAGCGAGATCTCTTCAAACATTTGACGTCACTTTCGTCTACAGTTATGAAAGCAATGGACGCTATGGAA
ATGCATGCAGAGAATTAACGGAGTGCCAAAAGGCTTCACCCCAAGTTGTGTTGACAGCAAAAGTGACAACACACGGCATG
TAAGACAGACATCCTGTCCTTGTTGATGTTGCCTTCGTATTATGGGAGAAATACTTCGGAACTTGCTACTGTTCAGATTC
TAGATGAGGCTGTTCTTGGGCAACCAGCTGCTTGTTTTCCTTCTTGAGAANNCNNNGNNNNNTACATAGAGAAGCTAGTC
GATGGAGTATCAGGCTTGTTTGTGAAACACTACGATTACTCGAGATGTATACACTGATATAGCATGTGGCGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis