Browse Element(s) Details


Os.54044.1.S1_at

Description gb:AK110261.1
DB_XREF= gi:32995470
TID=Os.54044.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-B04, full insert sequence.
FL= gb:AK101475.1 gb:AK110261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0469011/11Basic endochitinase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed
LOC_Os05g04670NANA5+2185023..2186785hypothetical protein
LOC_Os05g04680Os.50346.1.S1_at11/115+2190908..2191625expressed protein
LOC_Os05g04690Os.54044.1.S1_at11/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04690Os.36593.2.S1_x_at1/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04700Os.13968.1.S1_a_at6/115+2197918..2198479Uncharacterized protein family protein, expressed
LOC_Os05g04710OsAffx.4252.1.S1_x_at11/115+2200602..2203544incomplete root hair elongation, putative
LOC_Os05g04720NANA5+2204438..2204650hypothetical protein
LOC_Os05g04730OsAffx.19542.3.S1_x_at5/115+2211752..2215974retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54044.1.S1_at--778--3531Chr05:2196085..2196109 (25 bp)
CATCCAGCTGTCGTGGAACTTCAAC
LOC_Os05g04690
Os.54044.1.S1_at--590--4011Chr05:2196228..2196252 (25 bp)
CGTCGAAGCCGTACTCGTGCCACGA
LOC_Os05g04690
Os.54044.1.S1_at--301--3991Chr05:2196319..2196343 (25 bp)
CGGGCTGACGACGAACATCATCAAT
LOC_Os05g04690
Os.54044.1.S1_at--344--371Chr05:2196338..2196362 (25 bp)
ATCAATGGCGGACTCGAGTGCAACA
LOC_Os05g04690
Os.54044.1.S1_at--208--5711Chr05:2196348..2196372 (25 bp)
GACTCGAGTGCAACAACCGCACCGG
LOC_Os05g04690
Os.54044.1.S1_at--918--7511Chr05:2196386..2196410 (25 bp)
GTGGAGGACCGGATCGGATTCTTCC
LOC_Os05g04690
Os.54044.1.S1_at--596--6391Chr05:2196397..2196421 (25 bp)
GATCGGATTCTTCCGGCGATACTGC
LOC_Os05g04690
Os.54044.1.S1_at--971--7211Chr05:2196434..2196458 (25 bp)
GTCGATGTCGGTGACAACCTCGACT
LOC_Os05g04690
Os.54044.1.S1_at--676--1231Chr05:2196468..2196492 (25 bp)
AGTTGCCCTACTCATAATCGCGATT
LOC_Os05g04690
Os.54044.1.S1_at--748--3031Chr05:2196483..2196507 (25 bp)
AATCGCGATTTGTTCATTGCTACTA
LOC_Os05g04690
Os.54044.1.S1_at--607--6751Chr05:2196616..2196640 (25 bp)
GTTAATAGGATCGACAAGTTTGCTT
LOC_Os05g04690
Target Sequence 
CATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGG
TCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACTCG
TGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCT
GACGACGAACATCATCAATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGAT
TCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCATAA
TCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGA
TTATGTTTCTTTCAATAATGCAAATCAAAAGTTCCAATAATGAAAAAATTGGTTAATAGGATCGACAAGTTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis