Browse Element(s) Details


Os.5406.1.S1_at

Description gb:AY332470.1
DB_XREF= gi:33242904
GEN=GDH
TID=Os.5406.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5406 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) glutamate dehydrogenase (GDH) mRNA, complete cds.
PROD=glutamate dehydrogenase
FL= gb:AY332470.1 gb:AK071839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5804011/11Glutamate dehydrogenase, putative, expressed
LOC_Os01g256601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5406.1.S1_at--930--1491Chr03:32978098..32978122 (25 bp)
AGCACTCATCAGAGAACCGCGGGAT
LOC_Os03g58040
Os.5406.1.S1_at--1003--4351Chr03:32978042..32978066 (25 bp)
CCACGCTCACTGCTTACTGAAGAAT
LOC_Os03g58040
Os.5406.1.S1_at--967--2731Chr03:32978023..32978047 (25 bp)
AAGAATGTGATGTCCTCATCCCGGC
LOC_Os03g58040
Os.5406.1.S1_at--690--7011Chr03:32977802..32977826 (25 bp)
GTACATCATTGAGGCTGCAAACCAC
LOC_Os03g58040
Os.5406.1.S1_at--963--5811Chr03:32977675..32977795 (25 bp)
GACCCTGAGGCAGATGAGATCCTGT
LOC_Os03g58040
Os.5406.1.S1_at--9--1431Chr03:32977647..32977671 (25 bp)
AGAAAGGCGTTCTCATTCTTCCAGA
LOC_Os03g58040
Os.5406.1.S1_at--406--7751Chr03:32977603..32977627 (25 bp)
GGTGTCACAGTGAGCTACTTCGAGT
LOC_Os03g58040
Os.5406.1.S1_at--595--8192Chr03:32977283..32977307 (25 bp)
GGAAGCATGATCTCGTCAGTCATCT
LOC_Os03g58040
Os.5406.1.S1_at--107--8851Chr03:32977259..32977283 (25 bp)
TGATCATCTCCCTGTTGTACTTCAT
LOC_Os03g58040
Os.5406.1.S1_at--1114--3511Chr03:32977237..32977261 (25 bp)
CATGCACTGAATTTCTTTCGGTTTT
LOC_Os03g58040
Os.5406.1.S1_at--1063--10611Chr03:32977213..32977237 (25 bp)
TTCGCTTTGGTTAATCCGTCAACCG
LOC_Os03g58040
Target Sequence 
AGCACTCATCAGAGAACCGCGGGATCAAGGGTTTCGACGGAGGCGATGCAATCGACCCACGCTCACTGCTTACTGAAGAA
TGTGATGTCCTCATCCCGGCAGCACTTGGTGGAGTTATAAACAAGGACAACGCAAATGAGATCAAAGCAAAGTACATCAT
TGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCC
TCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGAACATTCAGGGTTTCATGTGGGACGAGGAGAAG
GTGAACAATGAGCTGAAGACCTACATGACCCGTGGGTTCAGGGATGTGAAGGAGATGTGCAGGAGCCACCACTGCGACCT
CCGCATGGGCGCCTTCACCCTCGGTGTCAACCGTGTCGCTCGCGCCACCGTTCTCAGAGGATGGGAAGCATGATCTCGTC
AGTCATCTGATCATCTCCCTGTTGTACTTCATGCACTGAATTTCTTTCGGTTTTTCGCTTTGGTTAATCCGTCAACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis