Browse Element(s) Details


Os.54132.1.S1_at

Description gb:AK102094.1
DB_XREF= gi:32987303
TID=Os.54132.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033083D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033083D05, full insert sequence.
FL= gb:AK102094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g098004/11SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09760Os.46012.2.S1_x_at10/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.46012.3.S1_x_at6/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.27088.1.A1_x_at5/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.54691.1.S1_x_at1/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09770OsAffx.3756.1.S1_at11/114+5221481..5223329Ser/Thr protein kinase, putative
LOC_Os04g09780OsAffx.13738.1.S1_at11/114+5226855..5227870hypothetical protein
LOC_Os04g09790NANA4+5232252..5232725hypothetical protein
LOC_Os04g09800Os.54132.1.S1_at4/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09800OsAffx.18075.1.S1_x_at1/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09810Os.49733.1.S1_at11/114+5243678..5246761riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os04g09820NANA4+5254300..5254509hypothetical protein
LOC_Os04g09830Os.31312.5.S1_x_at5/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.2.S1_x_at4/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.1.S1_at3/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09840OsAffx.22492.1.S1_x_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09840OsAffx.22492.1.S1_at1/114+5261236..5267391retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009294biological_processDNA mediated transformation
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54132.1.S1_at--377--10871Chr04:5235188..5235212 (25 bp)
TTGGACTTAATTTGACTGCTGCCTC
LOC_Os04g09800
Os.54132.1.S1_at--893--9091Chr04:5235172..5235196 (25 bp)
TGCTGCCTCCAATGTGTTCCTAATG
LOC_Os04g09800
Os.54132.1.S1_at--714--9611Chr04:5235000..5235024 (25 bp)
TCATGCGAATTCACCGTATCGGGCA
LOC_Os04g09800
Os.54132.1.S1_at--8--3231Chr04:5234962..5234986 (25 bp)
CAAGTAAGGCGCTTCATCGTCAAGG
LOC_Os04g09800
Os.54132.1.S1_at--411--1211Chr04:5234691..5234715 (25 bp)
AGTTCATATTTTGTTCCCTGGAGAC
NONE
Os.54132.1.S1_at--902--10651Chr04:5234678..5234702 (25 bp)
TTCCCTGGAGACTTGCTAGCATTTT
NONE
Os.54132.1.S1_at--513--7471Chr04:5234598..5234622 (25 bp)
GTGTGAAACTATGTGCCCATTCGAT
NONE
Os.54132.1.S1_at--221--7951Chr04:5234568..5234592 (25 bp)
GGATATATCTCCATTCTGGTCTGAA
NONE
Os.54132.1.S1_at--736--6871Chr04:5234537..5234561 (25 bp)
GTATATAGTGGCTCTTCTTAACATG
NONE
Os.54132.1.S1_at--145--3751Chr04:5234506..5234530 (25 bp)
CTCTACCCTTTCTAAATCGTGATCT
NONE
Os.54132.1.S1_at--573--2271Chr04:5234441..5234465 (25 bp)
AAATCTCTACTGAGGCTTCCTTTCA
NONE
Target Sequence 
TTGGACTTAATTTGACTGCTGCCTCCAATGTGTTCCTAATGGACCCATGGTGGAATCCTGCAGTGGAAGAACAAGCTATC
ATGCGAATTCACCGTATCGGGCAAAAGAGAGCGGTCCAAGTAAGGCGCTTCATCGTCAAGGATACGGTCGAGGAGCGGAT
GCAGAAGGTGCAAGCGTGCAAGCAGAGGATGATCTCTGGGGCGCTGACCGACGATGAAGTCCGCTCGGCTCGTATCGAGC
AACTGAAGATGCTGTTTACATGAGAAGTCTTGATCATGAGTTTGCAGGATGTTGTACAGTTCATATTTTGTTCCCTGGAG
ACTTGCTAGCATTTTAGGGGAAATGATCCAATGTTTTAAGGGTTCGGACTTGTGAATGGGGATGGAATGGGTGTGAAACT
ATGTGCCCATTCGATTTTGTGGATATATCTCCATTCTGGTCTGAACATTTTGTATATAGTGGCTCTTCTTAACATGAAAG
GCCTCTACCCTTTCTAAATCGTGATCTATTGTGCTGAAATGGCTGTTGGTGTTAACCAGGGAGTAAAAAATCTCTACTGA
GGCTTCCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis