Browse Element(s) Details


Os.54147.1.S1_at

Description gb:AK102180.1
DB_XREF= gi:32987389
TID=Os.54147.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086M02, full insert sequence.
FL= gb:AK102180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0390011/11NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed
LOC_Os02g03860Os.8662.1.S1_at11/112+1637581..1641852ATP synthase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein
LOC_Os02g03950Os.27262.3.S1_at11/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03950Os.27262.1.S1_a_at10/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54147.1.S1_at--303--9151Chr02:1658751..1658775 (25 bp)
TGCCGATGCTTCCATGTAGCCTTGA
LOC_Os02g03900
Os.54147.1.S1_at--731--6331Chr02:1658747..1658771 (25 bp)
GATGCTTCCATGTAGCCTTGATAAA
LOC_Os02g03900
Os.54147.1.S1_at--97--4451Chr02:1658733..1658757 (25 bp)
GCCTTGATAAATTATTGCTTGCTGA
LOC_Os02g03900
Os.54147.1.S1_at--1072--10211Chr02:1658721..1658745 (25 bp)
TATTGCTTGCTGAGTAGTGCATTAG
LOC_Os02g03900
Os.54147.1.S1_at--1031--1111Chr02:1658706..1658730 (25 bp)
AGTGCATTAGTTATTCCTCGTCGTC
LOC_Os02g03900
Os.54147.1.S1_at--1106--10651Chr02:1658693..1658717 (25 bp)
TTCCTCGTCGTCAGTGTATAACTAG
LOC_Os02g03900
Os.54147.1.S1_at--630--2531Chr02:1658674..1658698 (25 bp)
AACTAGATGTGTTCTCTGGATGATA
LOC_Os02g03900
Os.54147.1.S1_at--25--9471Chr02:1658660..1658684 (25 bp)
TCTGGATGATATAATGTGATTCGTC
LOC_Os02g03900
Os.54147.1.S1_at--253--7411Chr02:1658645..1658669 (25 bp)
GTGATTCGTCATTGATTTTTTGTTC
LOC_Os02g03900
Os.54147.1.S1_at--65--3631Chr02:1658615..1658639 (25 bp)
CTTGTTGTTGTTTCTAAGCAGCTTA
LOC_Os02g03900
Os.54147.1.S1_at--576--1471Chr02:1658599..1658623 (25 bp)
AGCAGCTTAGCTGTAAATTAAGTTT
LOC_Os02g03900
Target Sequence 
TGCCGATGCTTCCATGTAGCCTTGATAAATTATTGCTTGCTGAGTAGTGCATTAGTTATTCCTCGTCGTCAGTGTATAAC
TAGATGTGTTCTCTGGATGATATAATGTGATTCGTCATTGATTTTTTGTTCTTCTTCTTGTTGTTGTTTCTAAGCAGCTT
AGCTGTAAATTAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis