Browse Element(s) Details


Os.54189.1.S1_at

Description gb:AK102429.1
DB_XREF= gi:32987638
TID=Os.54189.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093H07, full insert sequence.
FL= gb:AK102429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1790011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17880Os.11711.1.S1_at11/1112+10251549..10254854U-box domain containing protein, expressed
LOC_Os12g17890OsAffx.25135.2.S1_x_at7/1112+10255645..10256376hypothetical protein
LOC_Os12g17890OsAffx.3516.1.S1_x_at1/1112+10255645..10256376hypothetical protein
LOC_Os12g17900Os.54189.1.S1_at11/1112+10278319..10284123armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os12g17910Os.8007.1.S1_at11/1112+10291015..10295321RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os12g17920OsAffx.32038.2.S1_at11/1112+10296940..10298139hypothetical protein
LOC_Os12g17920Os.24470.1.A1_at1/1112+10296940..10298139hypothetical protein
LOC_Os12g17930OsAffx.7627.1.S1_at11/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.23176.3.S1_x_at2/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.17424.1.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17930Os.19061.2.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17940OsAffx.31791.1.S1_at11/1112+10307836..10308297hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.54189.1.S1_at--405--2711Chr12:10278904..10278928 (25 bp)
AAGCATTCAGGCATGGTGACTCCAG
LOC_Os12g17900
Os.54189.1.S1_at--1063--10011Chr12:10278868..10278892 (25 bp)
TAGCAGAGCGAGCACTAAAGCATGT
LOC_Os12g17900
Os.54189.1.S1_at--981--2711Chr12:10278851..10278875 (25 bp)
AAGCATGTTGACAAGCTGCCCAATT
LOC_Os12g17900
Os.54189.1.S1_at--905--1891Chr12:10278756..10278780 (25 bp)
ACGTCGATTGCAGATCCTCTTGAGT
LOC_Os12g17900
Os.54189.1.S1_at--167--4931Chr12:10278715..10278739 (25 bp)
GCTTGAATCTTTGTGCATGCCGAAT
LOC_Os12g17900
Os.54189.1.S1_at--693--5271Chr12:10278694..10278718 (25 bp)
GAATGTCAGGATTGTGTCCCCAGCT
LOC_Os12g17900
Os.54189.1.S1_at--966--7451Chr12:10278681..10278705 (25 bp)
GTGTCCCCAGCTTAACAATGTTGGT
LOC_Os12g17900
Os.54189.1.S1_at--402--8671Chr12:10278573..10278597 (25 bp)
TGTGGTGTATATCTTTCCCTTGTAA
LOC_Os12g17900
Os.54189.1.S1_at--536--10651Chr12:10278559..10278583 (25 bp)
TTCCCTTGTAATCTTGTGTCTGTAT
LOC_Os12g17900
Os.54189.1.S1_at--231--6231Chr12:10278528..10278552 (25 bp)
GATGGCCGGATCCATAGCATGCTAT
LOC_Os12g17900
Os.54189.1.S1_at--406--4991Chr12:10278512..10278536 (25 bp)
GCATGCTATTTTTCCTCTGTTCATA
LOC_Os12g17900
Target Sequence
AAGCATTCAGGCATGGTGACTCCAGGACAAGACAAATAGCAGAGCGAGCACTAAAGCATGTTGACAAGCTGCCCAATTTN
TNTGGAATATTTTCCAAGATGGGGGCAGCATGACAATNTTAGAAAAGAATAGGCTAGCTNTACTTCACACGTCGATTGCA
GATCCTCTTGAGTTGCAGAGGAACACAGAGCTTGAATCTTTGTGCATGCCGAATGTCAGGATTGTGTCCCCAGCTTAACA
ATGTTGGTCTTGCAGACTGCGGCNCTCCAAATGGTTTTCGAATAGTCAGATTGACTGAATGAAAATTGAAGGTATTGCAT
GTGTTGTATAGTGTGGTGTATATCTTTCCCTTGTAATCTTGTGTCTGTATTATTCAGATGGCCGGATCCATAGCATGCTA
TTTTTCCTCTGTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis