Browse Element(s) Details


OsAffx.7627.1.S1_at

Description tigr:9640.m01760
TID=OsAffx.7627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1793011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17900Os.54189.1.S1_at11/1112+10278319..10284123armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os12g17910Os.8007.1.S1_at11/1112+10291015..10295321RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os12g17920OsAffx.32038.2.S1_at11/1112+10296940..10298139hypothetical protein
LOC_Os12g17920Os.24470.1.A1_at1/1112+10296940..10298139hypothetical protein
LOC_Os12g17930OsAffx.7627.1.S1_at11/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.23176.3.S1_x_at2/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.17424.1.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17930Os.19061.2.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17940OsAffx.31791.1.S1_at11/1112+10307836..10308297hypothetical protein
LOC_Os12g17950OsAffx.31792.1.S1_at11/1112+10318250..10319272hypothetical protein
LOC_Os12g17960OsAffx.31793.1.S1_at11/1112+10321824..10322060hypothetical protein
LOC_Os12g17970NANA12+10325539..10326192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17980NANA12+10327037..10329166retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7627.1.S1_at--512--1251Chr12:10303256..10303280 (25 bp)
AGATTCAAGGTCGTCTCCTGTATCA
LOC_Os12g17930
OsAffx.7627.1.S1_at--149--1531Chr12:10303232..10303256 (25 bp)
AGCATCGGTTTCCTTATTACTCTGG
LOC_Os12g17930
OsAffx.7627.1.S1_at--157--1071Chr12:10303170..10303194 (25 bp)
AGGGTTATCCCAATATCACGCTAGG
LOC_Os12g17930
OsAffx.7627.1.S1_at--1034--8371Chr12:10303143..10303167 (25 bp)
GGCGATACTATCATCTGAGGCAGTC
LOC_Os12g17930
OsAffx.7627.1.S1_at--599--951Chr12:10303114..10303138 (25 bp)
AGGACACTACCGCTGAGATCTTGAC
LOC_Os12g17930
OsAffx.7627.1.S1_at--868--1271Chr12:10303099..10303123 (25 bp)
AGATCTTGACATTCTCGCTCGTTGC
LOC_Os12g17930
OsAffx.7627.1.S1_at--299--6691Chr12:10303079..10303103 (25 bp)
GTTGCCGCGTTACTTGATGTCATTA
LOC_Os12g17930
OsAffx.7627.1.S1_at--427--431Chr12:10303031..10303055 (25 bp)
ATCTTGGTGCTCTATAGGGACCTCA
LOC_Os12g17930
OsAffx.7627.1.S1_at--62--131Chr12:10303002..10303025 (24 bp)
ATTCATGCCGTGCTGATCATACATA
LOC_Os12g17930
OsAffx.7627.1.S1_at--682--5151Chr12:10299704..10299728 (25 bp)
GCAACCCTTGCAGATATCCAGGCAT
LOC_Os12g17930
OsAffx.7627.1.S1_at--400--10871Chr12:10299680..10299704 (25 bp)
TTGGAAGCCTCCTTGACGCAGACAA
LOC_Os12g17930
Target Sequence 
AGATTCAAGGTCGTCTCCTGTATCAGCATCGGTTTCCTTATTACTCTGGCCTCCATGGATCACATCTACAACAAGGAGAT
CAAGACAGGGTTATCCCAATATCACGCTAGGAAGGCGATACTATCATCTGAGGCAGTCAAGGAGGACACTACCGCTGAGA
TCTTGACATTCTCGCTCGTTGCCGCGTTACTTGATGTCATTATGCAGTTGGTCGTGTGCCCGGTGATCTTGGTGCTCTAT
AGGGACCTCAATCCCATTCATGCCGTGCTGATCATACATAGCCCAACATATGGCAGATGCTCCTACAAGTATGAGTTTAC
TCTTCTTCTTGACAACCCTCAAAAGCTAACCATCAAGCATATTAGATATGGTTCCAGGAAGGTTGAACCTGCCGGTTCAA
GAGGAATGGCGGGGCAAGCCCATGTAGAGCGAGCACGACTGCTGCCCGTCGCAGAACAACTGCCACCAGCAACCCTTGCA
GATATCCAGGCATTGGAAGCCTCCTTGACGCAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis