Browse Element(s) Details


Os.54232.1.S1_at

Description gb:AK102658.1
DB_XREF= gi:32987867
TID=Os.54232.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101H19, full insert sequence.
FL= gb:AK102658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3719011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37180NANA5+21647720..21648037transposon protein, putative, unclassified
LOC_Os05g37190Os.54232.1.S1_at11/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.29835.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.2.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37200Os.47421.1.S1_at11/115+21667636..21670977Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g37210OsAffx.14991.1.S1_at11/115+21675159..21676472anthocyanin-related membrane protein 1, putative
LOC_Os05g37220OsAffx.27206.1.S1_x_at11/115+21676659..21677393hypothetical protein
LOC_Os05g37220OsAffx.27206.1.S1_s_at10/115+21676659..21677393hypothetical protein
LOC_Os05g37220Os.23651.1.A1_at1/115+21676659..21677393hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54232.1.S1_at--457--5251Chr05:21656110..21656134 (25 bp)
GAATCATACGCTTCGACGACGCAAT
LOC_Os05g37190
Os.54232.1.S1_at--326--4591Chr05:21656136..21656160 (25 bp)
GCGCAAATGCATGGCGGCGGATTAA
LOC_Os05g37190
Os.54232.1.S1_at--620--8791Chr05:21656179..21656203 (25 bp)
TGTTCTTGATCGTTAGCTAGCTATA
LOC_Os05g37190
Os.54232.1.S1_at--710--9951Chr05:21656202..21656226 (25 bp)
TAGCTAATTGCATGTACACTTCCCC
LOC_Os05g37190
Os.54232.1.S1_at--961--2711Chr05:21656310..21656334 (25 bp)
AAGCAGCTGAATTTTCTTCTGGATG
LOC_Os05g37190
Os.54232.1.S1_at--867--6291Chr05:21656334..21656358 (25 bp)
GATGACCGGAGTTTGCATGCAATCG
LOC_Os05g37190
Os.54232.1.S1_at--529--7611Chr05:21656360..21656384 (25 bp)
GGGACTGACTGATCACATAAGGTTT
LOC_Os05g37190
Os.54232.1.S1_at--586--9951Chr05:21656391..21656415 (25 bp)
TACCCGTAGCTTGGTAATTTGCAAG
LOC_Os05g37190
Os.54232.1.S1_at--873--10251Chr05:21656424..21656448 (25 bp)
TTTGTCAGCTTCACAGCCTAATGCT
LOC_Os05g37190
Os.54232.1.S1_at--521--6871Chr05:21656450..21656474 (25 bp)
GTTTGGCAGCCAAATGTATCAATGT
LOC_Os05g37190
Os.54232.1.S1_at--735--6891Chr05:21656473..21656497 (25 bp)
GTATCACTCGTGCATGACTTAATTT
LOC_Os05g37190
Target Sequence 
GAATCATACGCTTCGACGACGCAATGGCGCAAATGCATGGCGGCGGATTAATGAACTAACAGTGTTAATTGTTCTTGATC
GTTAGCTAGCTATAGCTAATTGCATGTACACTTCCCCCTTAGTTTACACACACACACACACCCACACAAAATGCAATAAG
ATTATGGAGCTAGGTTGCCGAGGAGAAGCTAAAGGCAGTGAAGCAGCTGAATTTTCTTCTGGATGATGACCGGAGTTTGC
ATGCAATCGGGGGACTGACTGATCACATAAGGTTTGTTAGTTACCCGTAGCTTGGTAATTTGCAAGGAAGAAAATTTGTC
AGCTTCACAGCCTAATGCTGGTTTGGCAGCCAAATGTATCAATGTATCACTCGTGCATGACTTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis