Browse Element(s) Details


Os.54276.1.A1_at

Description gb:AK102989.1
DB_XREF= gi:32988198
TID=Os.54276.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116D04, full insert sequence.
FL= gb:AK102989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3213010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32090Os.8255.1.S1_x_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32090Os.8255.2.S1_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32100Os.16365.1.S1_at11/119+19165945..19167413expressed protein
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein
LOC_Os09g32140OsAffx.30111.1.S1_at11/119+19184484..19185026hypothetical protein
LOC_Os09g32150Os.11004.1.S1_at11/119+19185445..19187541expressed protein
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54276.1.A1_at--484--2271NONE
AAATCGGCATGCTCTTTGGTGCGTT
NONE
Os.54276.1.A1_at--416--10591Chr09:19180479..19180503 (25 bp)
TTCTCGGATATGTCGGGTGCTACCA
LOC_Os09g32130
Os.54276.1.A1_at--360--3831Chr09:19180539..19180563 (25 bp)
CTGCCCTTGCCTTTGTGTTTTACAA
LOC_Os09g32130
Os.54276.1.A1_at--984--2211Chr09:19180560..19180584 (25 bp)
ACAAGCTCAGCGTTGTGTCCTCAGA
LOC_Os09g32130
Os.54276.1.A1_at--1108--9671Chr09:19180617..19181039 (25 bp)
TCACGCGGCTTAAATTCGGGACCAT
LOC_Os09g32130
Os.54276.1.A1_at--501--10451Chr09:19182355..19182377 (23 bp)
TTAGAATGCCGGTTTTCTTCCTCTA
LOC_Os09g32130
Os.54276.1.A1_at--581--10671Chr09:19182370..19182394 (25 bp)
TTCCTCTACATTTGTGCGTTCGTAT
LOC_Os09g32130
Os.54276.1.A1_at--719--6711Chr09:19182387..19182411 (25 bp)
GTTCGTATTCGATGTTGCTGGTATG
LOC_Os09g32130
Os.54276.1.A1_at--709--3491Chr09:19182423..19182447 (25 bp)
CAGGCGCTCACTTATTTCATTGTTT
LOC_Os09g32130
Os.54276.1.A1_at--743--6331Chr09:19182542..19182566 (25 bp)
GATGCATTTGTGTGAGTGGTTCCCA
LOC_Os09g32130
Os.54276.1.A1_at--217--7911Chr09:19182559..19182583 (25 bp)
GGTTCCCACTTAGGAGCTTGTTCTA
LOC_Os09g32130
Target Sequence 
AAATCGGCATGCTCTTTGGTGCGTTTCTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTT
GATGCTGCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACAAACAGCTT
GATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATCAAGAAGAACTATGTACTCCTGGACATTA
TTAGAATGCCGGTTTTCTTCCTCTACATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCA
CTTATTTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCTGGTTATAT
ATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCCCACTTAGGAGCTTGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54276.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis