Browse Element(s) Details


Os.54298.1.S1_at

Description gb:AK103180.1
DB_XREF= gi:32988389
TID=Os.54298.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121I12, full insert sequence.
FL= gb:AK103180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4974011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49720NANA5+28427397..28429278hypothetical protein
LOC_Os05g49730Os.50134.1.S1_at11/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49730Os.50134.2.S1_at10/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49740Os.54298.1.S1_at11/115+28450941..28453653pentatricopeptide, putative, expressed
LOC_Os05g49750Os.18409.1.S1_at11/115+28456444..28460577expressed protein
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54298.1.S1_at--312--3471Chr05:28451516..28451540 (25 bp)
CAGTGGCCCTACATGATGTTGAGGA
LOC_Os05g49740
Os.54298.1.S1_at--925--3131Chr05:28451453..28451477 (25 bp)
AATTAGCTCTTGCATTTGGCCTTAT
LOC_Os05g49740
Os.54298.1.S1_at--1014--10091Chr05:28451381..28451405 (25 bp)
TATGTGATGATTGCCATGTTGCCAT
LOC_Os05g49740
Os.54298.1.S1_at--633--6671Chr05:28451364..28451388 (25 bp)
GTTGCCATCAAACTCATTTCACTTG
LOC_Os05g49740
Os.54298.1.S1_at--975--2531Chr05:28451354..28451378 (25 bp)
AACTCATTTCACTTGCCACAGGCAG
LOC_Os05g49740
Os.54298.1.S1_at--261--1071Chr05:28451316..28451340 (25 bp)
AGGGACACTGTTCGGTTTCATTGTA
LOC_Os05g49740
Os.54298.1.S1_at--929--1311Chr05:28451287..28451311 (25 bp)
AGATGGAGTCTGCTCATGTGATGAC
LOC_Os05g49740
Os.54298.1.S1_at--833--791Chr05:28451182..28451206 (25 bp)
ATGTGGTTCTCAAAGGTCGATTGCA
LOC_Os05g49740
Os.54298.1.S1_at--431--7211Chr05:28451167..28451191 (25 bp)
GTCGATTGCATAAAGCCTCGTGAAT
LOC_Os05g49740
Os.54298.1.S1_at--864--1151Chr05:28451063..28451087 (25 bp)
AGTCATTAAAGTCGCAGCTCCAGAG
LOC_Os05g49740
Os.54298.1.S1_at--1140--2871Chr05:28450942..28450966 (25 bp)
AAGGGAGGATATGCTATTGCTTTCC
LOC_Os05g49740
Target Sequence 
CAGTGGCCCTACATGATGTTGAGGATGAACAAAAGGAAGAACATCTTATGTATCACAGTGAGAAATTAGCTCTTGCATTT
GGCCTTATTCGCACCCCCAAGGGAGAAGCTATTCGTATAATGAAAAACGTCAGGATATGTGATGATTGCCATGTTGCCAT
CAAACTCATTTCACTTGCCACAGGCAGAAGAATAGTTGTAAGGGACACTGTTCGGTTTCATTGTATAGAAGATGGAGTCT
GCTCATGTGATGACTATTGGTGATTCAATCTATATAATATGTCAATATAAAAGTGGCAAAGCTTTTGCCCTTTCTTAAAA
AAAAACTATATAATATGTGGTTCTCAAAGGTCGATTGCATAAAGCCTCGTGAATCAGCTGAATGGAGCTGATTGGCCATA
TATGTGATTCAAGAGCATTTTTGCTGAGTATAAATGTTGAGGTGGGACCAGAGAGTCATTAAAGTCGCAGCTCCAGAGGA
CAAGTGAAGTTAGGACATGGACATGGAAATGCAATCATTTTTTTGAAGAACAAAGTTAAAAGATGTAAATATGTGAATTA
TTTTAACGACTAACAAGGGAGGATATGCTATTGCTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis