Browse Element(s) Details


Os.54316.1.S1_at

Description gb:AK103302.1
DB_XREF= gi:32988511
TID=Os.54316.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125C23, full insert sequence.
FL= gb:AK103302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2506011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25010OsAffx.13013.1.S1_at11/113+14255279..14258382GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25020OsAffx.25218.1.S1_at11/113+14261154..14263772hypothetical protein
LOC_Os03g25030Os.18713.1.S1_at11/113+14268397..14272079GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25040Os.5919.1.S1_at11/113+14274404..14276702GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25080OsAffx.25219.1.S1_at11/113+14302995..14304494F-box domain containing protein
LOC_Os03g25090OsAffx.3318.1.S1_at11/113+14304997..14306169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54316.1.S1_at--223--10311Chr03:14281699..14281723 (25 bp)
TTTCTCCTAACTCTGGTGCTACTGT
LOC_Os03g25060
Os.54316.1.S1_at--882--9891Chr03:14281649..14281673 (25 bp)
TACTACTGTAGGGTGCTGTTCTTGC
LOC_Os03g25060
Os.54316.1.S1_at--343--1471Chr03:14281552..14281576 (25 bp)
AGAAGGCTGCTGATAGGGCATCATC
LOC_Os03g25060
Os.54316.1.S1_at--567--2591Chr03:14281448..14281472 (25 bp)
AAGGGAGGTTCTCACAGGCCCTAAT
LOC_Os03g25060
Os.54316.1.S1_at--95--6831Chr03:14281339..14281363 (25 bp)
GTTTAGGTCTTGATCTATCTCCTCT
LOC_Os03g25060
Os.54316.1.S1_at--860--6411Chr03:14281328..14281352 (25 bp)
GATCTATCTCCTCTACAATTTTTTG
LOC_Os03g25060
Os.54316.1.S1_at--4--9171Chr03:14281291..14281315 (25 bp)
TGCCCTGCTTGTCAATTCTTTCTTA
LOC_Os03g25060
Os.54316.1.S1_at--1035--1231Chr03:14281227..14281251 (25 bp)
AGTTGTTTAGATTTTGCCGCGAGGC
LOC_Os03g25060
Os.54316.1.S1_at--826--7691Chr03:14281189..14281213 (25 bp)
GGGTACATTGTTTGAGCCTCACCAT
LOC_Os03g25060
Os.54316.1.S1_at--813--1671Chr03:14281175..14281199 (25 bp)
AGCCTCACCATCCAATTGAGCTGAG
LOC_Os03g25060
Os.54316.1.S1_at--74--2831Chr03:14281128..14281152 (25 bp)
AAGTTGTTCTTAGTCCTTTCTCATC
LOC_Os03g25060
Target Sequence 
TTTCTCCTAACTCTGGTGCTACTGTTCTTGCTGCAACTGGGGATCATCAGTACTACTGTAGGGTGCTGTTCTTGCTGTTC
TTTCTGTGGTGATGAACAGCAGAAGCAGCAGCAGCAGCAGCATGGAGTAGGAGATTTGAGGCCTGGGAGAAGGCTGCTGA
TAGGGCATCATCAGCATCAGGTGGTGCTTGCAAAGGGATCAATGGAATTGAAGCATGCAGAGGAAGGAGGAGATGTGCTT
GATGAGGAGAAAAGGGAGGTTCTCACAGGCCCTAATCCTCTTCACAACAGATAGGATGGCATAAATATATAGCTGGCTAG
CTAGCTACTTCAGTTTGTTTTTCACATTTCTTCTGAATTTGTTTAGGTCTTGATCTATCTCCTCTACAATTTTTTGATGT
GGCCTTTTTGCCCTGCTTGTCAATTCTTTCTTAGCTAGGTGATTACGAATAAATAGTTGTTTGTTTTTGTTCAGTTGTTT
AGATTTTGCCGCGAGGCGTGTAACGCTTATGGGTACATTGTTTGAGCCTCACCATCCAATTGAGCTGAGCAATTTGCTGT
TCCAAACAATAAAGTTGTTCTTAGTCCTTTCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis