Browse Element(s) Details


Os.54317.1.S1_at

Description gb:AK103305.1
DB_XREF= gi:32988514
TID=Os.54317.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125E07, full insert sequence.
FL= gb:AK103305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5736011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54317.1.S1_at--364--8051Chr04:33924354..33924378 (25 bp)
GGAGCTTGGAACTGAGCTCCTCCTC
LOC_Os04g57360
Os.54317.1.S1_at--968--3791Chr04:33924394..33924418 (25 bp)
CTCCCCATGTTCTTGTAGATTAGGA
LOC_Os04g57360
Os.54317.1.S1_at--328--7811Chr04:33924441..33924465 (25 bp)
GGTCAGGTCAAGGTCAGTATCAGTA
LOC_Os04g57360
Os.54317.1.S1_at--1065--6631Chr04:33924466..33924490 (25 bp)
GTTGTTTTGATCAAGAGCACCTCAG
LOC_Os04g57360
Os.54317.1.S1_at--208--9671Chr04:33924487..33924511 (25 bp)
TCAGCTCTATGCTCCTTTTGCTGTT
LOC_Os04g57360
Os.54317.1.S1_at--715--6531Chr04:33924521..33924545 (25 bp)
GATTTCTTGCACTCTGATGAGCACT
LOC_Os04g57360
Os.54317.1.S1_at--793--1291Chr04:33924566..33924590 (25 bp)
AGATGGTGTAGTGTAATCCAATCCA
LOC_Os04g57360
Os.54317.1.S1_at--130--9851Chr04:33924594..33924618 (25 bp)
TACAGTTCTTCCCTTCAATCAACCT
LOC_Os04g57360
Os.54317.1.S1_at--1058--9731Chr04:33924608..33924632 (25 bp)
TCAATCAACCTCACTGTACCATATT
LOC_Os04g57360
Os.54317.1.S1_at--368--1971Chr04:33924620..33924644 (25 bp)
ACTGTACCATATTTTTGCTCCTTTG
LOC_Os04g57360
Os.54317.1.S1_at--98--10711Chr04:33924634..33924658 (25 bp)
TTGCTCCTTTGGTTCAACAATGAAC
LOC_Os04g57360
Target Sequence 
GGAGCTTGGAACTGAGCTCCTCCTCCTCCTGCAGCTGCTGCTCCCCATGTTCTTGTAGATTAGGAGAAGGAAGAAGACGA
CCAAGAAGGTCAGGTCAAGGTCAGTATCAGTAGTTGTTTTGATCAAGAGCACCTCAGCTCTATGCTCCTTTTGCTGTTCT
TTCTTTTGATTTCTTGCACTCTGATGAGCACTGAGGTTTGGAGGGAAAATCAAGATGGTGTAGTGTAATCCAATCCAAAT
TACAGTTCTTCCCTTCAATCAACCTCACTGTACCATATTTTTGCTCCTTTGGTTCAACAATGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis