Browse Element(s) Details


Os.54324.1.S1_at

Description gb:AK103332.1
DB_XREF= gi:32988541
TID=Os.54324.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125N22, full insert sequence.
FL= gb:AK103332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3347910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33440Os.18500.1.S1_at11/118+20725886..20729415dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein
LOC_Os08g33460Os.7046.1.S1_at11/118+20740742..20741523expressed protein
LOC_Os08g33470OsAffx.29490.1.S1_at11/118+20746061..20746417hypothetical protein
LOC_Os08g33479Os.54324.1.S1_at10/118+20751081..20753399expressed protein
LOC_Os08g33488Os.50641.2.S1_a_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488Os.50641.1.S1_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488OsAffx.29491.1.S1_at1/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33500NANA8+20775648..20778980transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54324.1.S1_at--1130--9891Chr08:20752909..20752933 (25 bp)
TACGTACTGAAACAGCTACCGGAAT
LOC_Os08g33479
Os.54324.1.S1_at--885--2391Chr08:20752943..20752967 (25 bp)
AAACTTTTTCACCTGAGTATCACAT
LOC_Os08g33479
Os.54324.1.S1_at--767--351Chr08:20752966..20752990 (25 bp)
ATAAGCTCAGCCATTTCGCTATGGT
LOC_Os08g33479
Os.54324.1.S1_at--623--10631NONE
TTCGCTATGGTACTCTAGGGTCTAA
NONE
Os.54324.1.S1_at--486--711Chr08:20753116..20753140 (25 bp)
ATGATGTGCTTCCTTCAGGTTGGAT
LOC_Os08g33479
Os.54324.1.S1_at--353--10691Chr08:20753148..20753172 (25 bp)
TTGCCAATGATTTTGCCGCAAGTTA
LOC_Os08g33479
Os.54324.1.S1_at--938--4493Chr08:20753162..20753186 (25 bp)
GCCGCAAGTTATGCAGTTGCTGCCT
LOC_Os08g33479
Os.54324.1.S1_at--1019--3811Chr08:20753195..20753219 (25 bp)
CTGCCTTTGTTTGCTAAACCATGAA
LOC_Os08g33479
Os.54324.1.S1_at--1148--3171Chr08:20753243..20753267 (25 bp)
CAATTGCAAGAGACCTTCCAGGAAA
LOC_Os08g33479
Os.54324.1.S1_at--694--151Chr08:20753322..20753346 (25 bp)
ATTATCTGCTCATGTACGATTACAC
LOC_Os08g33479
Os.54324.1.S1_at--372--5471Chr08:20753372..20753396 (25 bp)
GAACTTTTGTTGCTGGGTTTTGCAT
LOC_Os08g33479
Target Sequence 
TACGTACTGAAACAGCTACCGGAATCCAGAAGTAAAACTTTTTCACCTGAGTATCACATAAGCTCAGCCATTTCGCTATG
GTACTCTAGGGTCTAAACATGGCAAATAGTCTAAGTCTGTAACAATTATTATAGATATCAGTACAAACAACTTAATGGTG
AGGAGACAGTTATATCATGATTTTCATGCTGATTATTATTCCTATATATGATGTGCTTCCTTCAGGTTGGATGATGATCT
TGCCAATGATTTTGCCGCAAGTTATGCAGTTGCTGCCTCAAGCTTACTGCCTTTGTTTGCTAAACCATGAAACCAGCACA
ACAATAAGAGACTCCAATTGCAAGAGACCTTCCAGGAAATCTTTAGTAGGCATCATATGTTCAATACAAATATACCTGAG
GTTGTTAGAGCAAATTATCTGCTCATGTACGATTACACTATCTCTATTATCAGAAAATCACAAGAACTTTTGTTGCTGGG
TTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis