Browse Element(s) Details


Os.5434.1.S1_at

Description gb:AK068581.1
DB_XREF= gi:32978598
TID=Os.5434.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155K13, full insert sequence.
FL= gb:AK068581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2685011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26820Os.49381.1.S1_at11/118+16174834..16177316expressed protein
LOC_Os08g26830OsAffx.29374.1.S1_at11/118+16180462..16180866hypothetical protein
LOC_Os08g26840Os.52344.1.S1_at10/118+16187161..16189218expressed protein
LOC_Os08g26850Os.5434.1.S1_at11/118+16198951..16200833expressed protein
LOC_Os08g26860OsAffx.29375.1.S1_at11/118+16204636..16206095hypothetical protein
LOC_Os08g26870Os.9489.1.S1_s_at11/118+16207490..16212443wound-responsive protein, putative, expressed
LOC_Os08g26870Os.9489.1.S1_x_at10/118+16207490..16212443wound-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5434.1.S1_at--601--1651Chr08:16199387..16199411 (25 bp)
AGCGCTTCGCCGATCTCTGCAAGGG
LOC_Os08g26850
Os.5434.1.S1_at--1124--3191Chr08:16199368..16199392 (25 bp)
CAAGGGCACCGTGTTCGACGTGGAC
LOC_Os08g26850
Os.5434.1.S1_at--50--9551Chr08:16199133..16199157 (25 bp)
TCTATTGGCAGAGACAGTGGTCCAT
LOC_Os08g26850
Os.5434.1.S1_at--631--5651Chr08:16199121..16199145 (25 bp)
GACAGTGGTCCATGTGCATAGCAAG
LOC_Os08g26850
Os.5434.1.S1_at--31--771Chr08:16199110..16199134 (25 bp)
ATGTGCATAGCAAGCAGCCTATTGT
LOC_Os08g26850
Os.5434.1.S1_at--122--1691Chr08:16199095..16199119 (25 bp)
AGCCTATTGTACAACATGCCTGTTT
LOC_Os08g26850
Os.5434.1.S1_at--575--3271Chr08:16199084..16199108 (25 bp)
CAACATGCCTGTTTCATTGTAGAGC
LOC_Os08g26850
Os.5434.1.S1_at--202--2531Chr08:16199049..16199073 (25 bp)
AACTTAGGGCTTTGCCAATCACAAC
LOC_Os08g26850
Os.5434.1.S1_at--853--371Chr08:16199032..16199056 (25 bp)
ATCACAACTTGCCATAGTTTGCCAA
LOC_Os08g26850
Os.5434.1.S1_at--134--6851Chr08:16199016..16199040 (25 bp)
GTTTGCCAAATTAAGGCCTATGGGA
LOC_Os08g26850
Os.5434.1.S1_at--1030--10031Chr08:16198998..16199022 (25 bp)
TATGGGAAAACCAACCTCTTGCAAG
LOC_Os08g26850
Target Sequence 
AGCGCTTCGCCGATCTCTGCAAGGGCACCGTGTTCGACGTGGACGACGCCGACCAGAACTACCTGAGGCCGGTGTGCCAG
GTGCTCGACCGGCGGTTCCAGAGCCNNNCGNGNNGGNGGATGGCGNTGGCTNGAAGCAGAANGTACTTCGCCAACCCGTG
GNTCGCCGCCGGCCTCGCGGNCGGNGGCCGTCATNTTCGTCTGNCACCGTCATCCAGGCGGNTTTACTCCGTTCTGAGTT
ACAAAAAAGGATGATGCGGGNTCTATTGGCAGAGACAGTGGTCCATGTGCATAGCAAGCAGCCTATTGTACAACATGCCT
GTTTCATTGTAGAGCAAAATAATTTAACTTAGGGCTTTGCCAATCACAACTTGCCATAGTTTGCCAAATTAAGGCCTATG
GGAAAACCAACCTCTTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis