Browse Element(s) Details


Os.54354.1.S1_at

Description gb:AK103605.1
DB_XREF= gi:32988814
TID=Os.54354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133H04, full insert sequence.
FL= gb:AK103605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2748010/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27430OsAffx.25253.1.S1_at11/113+15718849..15719594hypothetical protein
LOC_Os03g27440OsAffx.25254.1.S1_at11/113+15724063..15724668hypothetical protein
LOC_Os03g27450Os.14128.1.S1_at8/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27450Os.2213.2.S1_x_at1/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27460Os.12818.1.S1_at11/113+15731130..15734868DnaJ domain containing protein, expressed
LOC_Os03g27470NANA3+15736320..15737638hypothetical protein
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed
LOC_Os03g27484NANA3+15749223..15751936hypothetical protein
LOC_Os03g27490OsAffx.13076.1.S1_at11/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29308.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27510OsAffx.3344.1.S1_at11/113+15758873..15763677serine carboxypeptidase S10 family protein, putative
LOC_Os03g27520OsAffx.9572.1.S1_at1/113+15765275..15767372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27530OsAffx.25255.1.S1_at10/113+15768495..15775420Retinoid-inducible serine carboxypeptidase precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54354.1.S1_at--561--2811NONE
AAGATCATCCCTAAAGACGTTGTAT
NONE
Os.54354.1.S1_at--3--8071Chr03:15744082..15744106 (25 bp)
GGAGCAGTCCTACACGGTCTACAAT
LOC_Os03g27480
Os.54354.1.S1_at--628--2231Chr03:15744062..15744086 (25 bp)
ACAATGCGCTGATCAATGACTTCAT
LOC_Os03g27480
Os.54354.1.S1_at--822--1591Chr03:15743888..15743912 (25 bp)
AGCTCCTGTCGTATGGCGTCAATGT
LOC_Os03g27480
Os.54354.1.S1_at--613--771Chr03:15742929..15742953 (25 bp)
ATGTGATCTGCTCAACGGTTGGTGC
LOC_Os03g27480
Os.54354.1.S1_at--366--931Chr03:15742753..15742777 (25 bp)
AGGCAGCCTCTACATTGTGGCTCTA
LOC_Os03g27480
Os.54354.1.S1_at--2--3271Chr03:15742719..15742743 (25 bp)
CAAAGGGCTTTGTCAGATCCTACAA
LOC_Os03g27480
Os.54354.1.S1_at--1127--9911Chr03:15742681..15742705 (25 bp)
TACTGGATCCTTGGAGCTGGCCATT
LOC_Os03g27480
Os.54354.1.S1_at--9--3931Chr03:15742553..15742689 (25 bp)
CTGGCCATTTTGTACCTGTTGATCA
LOC_Os03g27480
Os.54354.1.S1_at--256--1671Chr03:15742529..15742553 (25 bp)
AGCCCTGCATTGCTCTTGACATGAT
LOC_Os03g27480
Os.54354.1.S1_at--348--3071Chr03:15742490..15742514 (25 bp)
AATCTTCAGTTCAGTCTCATCCATA
LOC_Os03g27480
Target Sequence 
AAGATCATCCCTAAAGACGTTGTATGGGAGGAGCAGTCCTACACGGTCTACAATGCGCTGATCAATGACTTCATGAAGCC
GAGAATTCAGGAGGTCGATGAGCTCCTGTCGTATGGCGTCAATGTGACGGTGTACAATGGACAGCTCGATGTGATCTGCT
CAACGGTTGGTGCAGAAGCATGGGTTCAGAAGCTCAAATGGGATGGGCTGAAGAACTTCTTGAGATTGCCAAGGCAGCCT
CTACATTGTGGCTCTAGTGAAGTCACAAAGGGCTTTGTCAGATCCTACAAAAACCTGCATTTCTACTGGATCCTTGGAGC
TGGCCATTTTGTACCTGTTGATCAGCCCTGCATTGCTCTTGACATGATTGGTAGCATAACGCAATCTTCAGTTCAGTCTC
ATCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis