Browse Element(s) Details


Os.54366.1.S1_at

Description gb:AK106532.1
DB_XREF= gi:32991741
TID=Os.54366.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A06, full insert sequence.
FL= gb:AK106532.1 gb:AK103677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2754011/11expressed protein
LOC_Os08g256705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27480OsAffx.14941.1.S1_at11/118+16641694..16642639hypothetical protein
LOC_Os08g27480OsAffx.14941.1.S1_s_at8/118+16641694..16642639hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_s_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.25952.1.S1_s_at1/118+16643638..16647767hypothetical protein
LOC_Os08g27500NANA8+16650539..16652968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g27520NANA8+16658309..16659979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27530OsAffx.17191.1.S1_at11/118+16660405..16663927hypothetical protein
LOC_Os08g27540Os.54366.1.S1_at11/118+16664745..16668048expressed protein
LOC_Os08g27550NANA8+16668802..16669157hypothetical protein
LOC_Os08g27560OsAffx.5952.1.S1_at2/118+16670594..16671058hypothetical protein
LOC_Os08g27570OsAffx.278.1.S1_at1/118+16672003..16676015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27580Os.50614.1.S1_at11/118+16678856..16682068expressed protein
LOC_Os08g27580Os.50614.2.S1_x_at11/118+16678856..16682068expressed protein
LOC_Os08g27590OsAffx.23483.1.S1_x_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27590OsAffx.25361.1.S1_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27600NANA8+16693020..16693802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54366.1.S1_at--266--8352Chr08:16666153..16666177 (25 bp)
GGCGTTTCCTACCATTGTGGGTGAT
LOC_Os08g27540
Os.54366.1.S1_at--474--9192Chr08:16666177..16666201 (25 bp)
TGCCATTGTGTTTTACCATCAGAAG
LOC_Os08g27540
Os.54366.1.S1_at--876--10731Chr08:16666212..16666236 (25 bp)
TTGCACAATACCACCTCAGAAGCGG
LOC_Os08g27540
Os.54366.1.S1_at--316--1451Chr08:16666229..16666253 (25 bp)
AGAAGCGGCACATTGTCACCCACAT
LOC_Os08g27540
Os.54366.1.S1_at--268--6252Chr08:16666256..16666280 (25 bp)
GATGGATGTATCTTTGCGACTAATA
LOC_Os08g27540
Os.54366.1.S1_at--152--7272Chr08:16666287..16666311 (25 bp)
GTCCTAGTAGCATCATTCACCATAT
LOC_Os08g27540
Os.54366.1.S1_at--1153--9852Chr08:16666313..16666337 (25 bp)
TACACCTGTTGCTTTCGTACACAAT
LOC_Os08g27540
Os.54366.1.S1_at--883--2331Chr08:16667865..16667889 (25 bp)
AAAGATGCTTCCCTCTGTTGTTGAA
LOC_Os08g27540
Os.54366.1.S1_at--420--8031Chr08:16667955..16667979 (25 bp)
GGAGTTATGTAACCCTGGCTTGTAA
LOC_Os08g27540
Os.54366.1.S1_at--575--2611Chr08:16667965..16667989 (25 bp)
AACCCTGGCTTGTAAAGTTCTTGTG
LOC_Os08g27540
Os.54366.1.S1_at--662--6451Chr08:16667996..16668020 (25 bp)
GATCAAACTTCCATCATCATAGTAG
LOC_Os08g27540
Target Sequence 
GGCGTTTCCTACCATTGTGGGTGATGCCATTGTGTTTTACCATCAGAAGGAGAATTATCTTGCACAATACCACCTCAGAA
GCGGCACATTGTCACCCACATCAGATGGATGTATCTTTGCGACTAATATGCCAAGTCCTAGTAGCATCATTCACCATATC
TACACCTGTTGCTTTCGTACACAATGGACCAAGGGACATTTATTGTTTCAAAGGGAGAACAGGGCATGGCAGATGAAACG
GAAGTAGGGATAGACGGGGCGTAAACAACTCTTGTTTTGTGTTGGTGGTGGTGCCTGCCTGCCTGGTTTTCCTTCAGGGA
TATATTTGTTGATCTACAGGGGAAGTAGTTCCCGGNGGCTGTGAAAGTTTTGCTTTGGTACTTATAATCATGTTACTATT
TATGTGACAAAGATGCTTCCCTCTGTTGTTGAATCAGGCAACTGTTTCATGTTGAAACAACTAAATTAATTATTGTAATT
GGCATGGTATTTTCCAATGGAGTTATGTAACCCTGGCTTGTAAAGTTCTTGTGACAATTGATCAAACTTCCATCATCATA
GTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis