Browse Element(s) Details


Os.54369.1.S1_at

Description gb:AK103705.1
DB_XREF= gi:32988914
TID=Os.54369.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136N14, full insert sequence.
FL= gb:AK103705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5047010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50440Os.3064.1.S1_at10/113+28730798..28735789Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os03g50450Os.49263.1.S1_at11/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.3066.1.S1_at2/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.41315.1.S1_x_at1/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50470Os.54369.1.S1_at10/113+28754018..28759470expressed protein
LOC_Os03g50470Os.37705.2.S1_x_at3/113+28754018..28759470expressed protein
LOC_Os03g50480Os.5894.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50480Os.50437.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54369.1.S1_at--988--4051Chr03:28755853..28755877 (25 bp)
CGATGAGTCTCACAAGTGCGCTGAA
LOC_Os03g50470
Os.54369.1.S1_at--1115--7291Chr03:28755838..28755862 (25 bp)
GTGCGCTGAATTGTTGCGTGCAGTT
LOC_Os03g50470
Os.54369.1.S1_at--106--4671Chr03:28755823..28755847 (25 bp)
GCGTGCAGTTTGACATCTCTGATTT
LOC_Os03g50470
Os.54369.1.S1_at--133--8851Chr03:28755784..28755808 (25 bp)
TGATCAGAGCGGATATGCCACCGTA
LOC_Os03g50470
Os.54369.1.S1_at--467--9831Chr03:28755750..28755774 (25 bp)
TAAAGCTCAGGAGGGTGGTCATGTC
LOC_Os03g50470
Os.54369.1.S1_at--685--10031Chr03:28755699..28755723 (25 bp)
TAGAGCTAGCACACTGCATTCTTCG
LOC_Os03g50470
Os.54369.1.S1_at--447--4951Chr03:28755684..28755708 (25 bp)
GCATTCTTCGTTGTGCTATTAGACT
LOC_Os03g50470
Os.54369.1.S1_at--403--1011Chr03:28754164..28754188 (25 bp)
AGGATTGCAGCATTTACGGTTGACG
LOC_Os03g50470
Os.54369.1.S1_at--15--10771NONE
TTGACGAATGTAGGCGCACGCGCAC
NONE
Os.54369.1.S1_at--937--2051Chr03:28754082..28754106 (25 bp)
ACTTCTCTGACTGTACACGTTAGCA
LOC_Os03g50470
Os.54369.1.S1_at--255--1891Chr03:28754066..28754090 (25 bp)
ACGTTAGCACCACTGTACTGCAGCT
LOC_Os03g50470
Target Sequence 
CGATGAGTCTCACAAGTGCGCTGAATTGTTGCGTGCAGTTTGACATCTCTGATTTCGTCATCAGACAGGTGATCAGAGCG
GATATGCCACCGTATCGGCATGATAAAGCTCAGGAGGGTGGTCATGTCTGGAGCCTGTCATTGGCAGGGGCTGATAGAGC
TAGCACACTGCATTCTTCGTTGTGCTATTAGACTTGACTGTATGATCATGGATCCGATGGTAAGAATTAAGGGCCTCCCG
GTGGTTGATTGGTTGGTGGAAAGAGGCCGCAGGATTGCCAAAGAGCTTCTTGAGAGGGAGGAGTCTCAGGGTGTTCTTAG
GGTGTGTTTGAGGATAAGGGGCTCGAGGAGATTGGGAAGATACGTAAAACGAGATTATGTGAACTTGATTGGGTGCAAGG
ATTGCAGCATTTACGGTTGACGAATGTAGGCGCACGCGCACGGGCCCGAGGGGTCAAAGAAGGGGGCGATACGTCAACAA
CTTCTCTGACTGTACACGTTAGCACCACTGTACTGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis