Browse Element(s) Details


Os.54381.1.S1_at

Description gb:AK103785.1
DB_XREF= gi:32988994
TID=Os.54381.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145I11, full insert sequence.
FL= gb:AK103785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3848011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os02g322202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g213901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38480Os.54381.1.S1_at11/116+22806541..22808931retrotransposon protein, putative, unclassified, expressed
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38500NANA6+22816834..22817166hypothetical protein
LOC_Os06g38510Os.18224.1.S1_at11/116+22820120..22822391Pectate lyase precursor, putative, expressed
LOC_Os06g38520OsAffx.27990.1.S1_at11/116+22823679..22825322Pectate lyase family protein
LOC_Os06g38529NANA6+22828842..22829431NA
LOC_Os06g38540Os.20602.2.S1_x_at10/116+22832940..22835114hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54381.1.S1_at--779--9771Chr06:22807307..22807331 (25 bp)
TAATGGATCAGCTTCTTTGGCCCCT
LOC_Os06g38480
Os.54381.1.S1_at--848--2771Chr06:22806983..22807007 (25 bp)
AAGAGCACTCGTTGGTACTGGCCAT
LOC_Os06g38480
Os.54381.1.S1_at--1149--531Chr06:22806960..22806984 (25 bp)
ATCGCCATAGTAGTTCTCCTGGGAA
LOC_Os06g38480
Os.54381.1.S1_at--240--5412Chr06:22806938..22806962 (25 bp)
GAAGCTCTATGTTCTCGATCACTTG
LOC_Os06g38480
Os.54381.1.S1_at--1096--2151Chr06:22806871..22806895 (25 bp)
ACAGCCTTGGGTTATGCATCTTCTA
LOC_Os06g38480
Os.54381.1.S1_at--248--651Chr06:22806858..22806882 (25 bp)
ATGCATCTTCTACAACTTTTCCACA
LOC_Os06g38480
Os.54381.1.S1_at--547--3471Chr06:22806778..22806802 (25 bp)
CAGGGTGTTCTAGGTCATGTCTCTA
LOC_Os06g38480
Os.54381.1.S1_at--365--1271Chr06:22806711..22806735 (25 bp)
AGATACAACTTCCTTACCCTATTAG
LOC_Os06g38480
Os.54381.1.S1_at--822--8111Chr06:22806678..22806702 (25 bp)
GGACTAGTTGTCCTTTTGACCTTGT
LOC_Os06g38480
Os.54381.1.S1_at--126--9172Chr06:22806632..22806656 (25 bp)
TGCCCCATTTGCTTCTAAGGGTGGA
LOC_Os06g38480
Os.54381.1.S1_at--34--2172Chr09:12918239..12918263 (25 bp)
ACACCGTTCACAACTTTTATCCATA
LOC_Os09g21390
Target Sequence 
TAATGGATCAGCTTCTTTGGCCCCTGCACCAGGATCGTCAGACAAGAGCACTCGTTGGTACTGGCCATCGCCATAGTAGT
TCTCCTGGGAAGCTCTATGTTCTCGATCACTTGAGTCTTCCACCTTCATCTTTTGGCTCCACCACCACTAGTTCCACAGC
CTTGGGTTATGCATCTTCTACAACTTTTCCACAATGGCATCATAGATTGGGGCATCTTTGTGGGTCCCGCCTTTCAACTT
TAATTCGTCAGGGTGTTCTAGGTCATGTCTCTATTGATACTACTTTTGATTGTACGGGTTGTAAACTTGGAAAACAGATA
CAACTTCCTTACCCTATTAGTAATTCTAGGACTAGTTGTCCTTTTGACCTTGTTCATTCTGATGTATGGGGCCCTGCCCC
ATTTGCTTCTAAGGGTGGACACAAATATTATGTCATATTTATAGATGATTATTCGAGATACACTTGGATTTACTTCATGA
AACACCGTTCACAACTTTTATCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis