Browse Element(s) Details


Os.54383.1.S1_at

Description gb:AK103806.1
DB_XREF= gi:32989015
TID=Os.54383.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033146N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033146N17, full insert sequence.
FL= gb:AK103806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2443411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24400Os.50132.1.S1_at11/118+14605752..14609430CRSP complex subunit 2, putative, expressed
LOC_Os08g24410Os.45957.4.S1_x_at6/118+14613329..14618665retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein
LOC_Os08g24434Os.54383.1.S1_at11/118+14627447..14633423expressed protein
LOC_Os08g24450OsAffx.30966.3.A1_x_at11/118+14635916..14643574AT hook motif-containing protein, putative
LOC_Os08g24460OsAffx.19287.2.S1_s_at11/118+14644658..14646629hypothetical protein
LOC_Os08g24470OsAffx.31415.1.S1_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24470OsAffx.31415.2.S1_s_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24480OsAffx.29329.2.S1_x_at11/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_x_at5/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_at1/118+14654116..14656554hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54383.1.S1_at--1054--3631Chr08:14627978..14628002 (25 bp)
CTTCTGGAGCTGTACCGGCGCGCGC
LOC_Os08g24434
Os.54383.1.S1_at--139--3491Chr08:14627739..14627763 (25 bp)
CAGGCCGACCGTGCAGATGATCGTG
LOC_Os08g24434
Os.54383.1.S1_at--1011--1271Chr08:14627638..14627662 (25 bp)
AGATCGTGCTCAGCGGCAAGGACGA
LOC_Os08g24434
Os.54383.1.S1_at--746--4091Chr08:14627610..14627634 (25 bp)
CGACGACCGCTCATTCAGGTTCCAG
LOC_Os08g24434
Os.54383.1.S1_at--500--1431Chr08:14627587..14627611 (25 bp)
AGAACATCGGCCTCCCGGATAGCTG
LOC_Os08g24434
Os.54383.1.S1_at--873--7931Chr08:14627571..14627595 (25 bp)
GGATAGCTGGCTGTGACCCGAGTTT
LOC_Os08g24434
Os.54383.1.S1_at--268--8471Chr08:14627564..14627588 (25 bp)
TGGCTGTGACCCGAGTTTTTACTTT
LOC_Os08g24434
Os.54383.1.S1_at--44--10471Chr08:14627539..14627563 (25 bp)
TTACGTTGCTAGTTCGTTCGCTCGA
LOC_Os08g24434
Os.54383.1.S1_at--95--9351Chr08:14627522..14627546 (25 bp)
TCGCTCGATCGCCTCATGATGAACA
LOC_Os08g24434
Os.54383.1.S1_at--714--8851Chr08:14627506..14627530 (25 bp)
TGATGAACACTGATCGATTAGCCCC
LOC_Os08g24434
Os.54383.1.S1_at--506--9831Chr08:14627461..14627485 (25 bp)
TAAACTCGTCGATTAACCATTCAAA
LOC_Os08g24434
Target Sequence 
CTTCTGGAGCTGTACCGGCGCGCGCGGCGGGCGTCGAAGCTCCTCGTCGTCTCCCGCGTCGGCGACGACAAGGTGCTCCC
CTGGGCCACCTCCACCGCCGGCGACATCCGCTGCTTCGACACCGTCTCGCTCAGCCAGCGGCTGTCGCTGCACCGCCACG
CGCTCCGCCCCGTCACCCTCCACTTCCTCATGTGGGAGCGCCTCCCGCCCGCCGCCGTCATCAGGGGCGGCGCCGCCGCC
AGGCCGACCGTGCAGATGATCGTGCAGGGCGACGAGGAGGGAGGAGGGGACGCGGCCGACGAGTCCACCGACGAGGTCGG
CTTCGACGGCGACGGGCCGGAGATCGTGCTCAGCGGCAAGGACGACTCCGACGACCGCTCATTCAGGTTCCAGAACATCG
GCCTCCCGGATAGCTGGCTGTGACCCGAGTTTTTACTTTTTACGTTGCTAGTTCGTTCGCTCGATCGCCTCATGATGAAC
ACTGATCGATTAGCCCCCTTGCAGTAATAATGGAACATAAACTCGTCGATTAACCATTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis