Browse Element(s) Details


Os.54394.1.S1_at

Description gb:AK103885.1
DB_XREF= gi:32989094
TID=Os.54394.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150B14, full insert sequence.
FL= gb:AK103885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5246011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52480Os.19953.1.S1_at11/112+32105442..32107080Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os02g52490Os.48260.1.S1_at11/112+32113141..32114928expressed protein
LOC_Os02g52490Os.48260.1.S2_at9/112+32113141..32114928expressed protein
LOC_Os02g52500OsAffx.24835.1.S1_at11/112+32116910..32118049hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54394.1.S1_at--780--3971Chr02:32090255..32090279 (25 bp)
CGGTCGAAGTCATCCCAGAGGGCGA
LOC_Os02g52460
Os.54394.1.S1_at--116--5831Chr02:32090095..32090119 (25 bp)
GAGCCACAGCTGAAGACCCAATTTT
LOC_Os02g52460
Os.54394.1.S1_at--1152--8631Chr02:32090070..32090094 (25 bp)
TGGGACTGAAGTTCCGGCGACCGAA
LOC_Os02g52460
Os.54394.1.S1_at--277--2371Chr02:32090046..32090070 (25 bp)
AAACCATGGCGTGGACCAGGTGCAA
LOC_Os02g52460
Os.54394.1.S1_at--1042--5151Chr02:32089996..32090020 (25 bp)
GCAACGATGTGGATCCCATGCAAGA
LOC_Os02g52460
Os.54394.1.S1_at--101--8931Chr02:32089825..32089848 (24 bp)
TGAGCCACAAATCCCAGCTGTTGGA
LOC_Os02g52460
Os.54394.1.S1_at--1127--2791Chr02:32089748..32089772 (25 bp)
AAGATGATCCACCACGAGAAGCGCA
LOC_Os02g52460
Os.54394.1.S1_at--609--5951Chr02:32089733..32089757 (25 bp)
GAGAAGCGCAGAACCAACCGGGCAA
LOC_Os02g52460
Os.54394.1.S1_at--391--331Chr02:32089586..32089610 (25 bp)
ATACTCAACTCAGTTACCTGCATCT
LOC_Os02g52460
Os.54394.1.S1_at--790--431Chr02:32089565..32089589 (25 bp)
ATCTTCGCTTGTTATTCCCTTGCAT
LOC_Os02g52460
Os.54394.1.S1_at--229--8791Chr02:32089475..32089499 (25 bp)
TGTTATTGTGCTACTGCCTGAATAG
LOC_Os02g52460
Target Sequence 
CGGTCGAAGTCATCCCAGAGGGCGAACCAGATGGAGCCACAGCTGAAGACCCAATTTTTGGGACTGAAGTTCCGGCGACC
GAAAACCATGGCGTGGACCAGGTGCAAGAAGATATAGACATACCGGTCGAAAGCAACGATGTGGATCCCATGCAAGAAGA
TCTCCTTAATGAAATCTACAATAAGGAAGCTGATGAGCCACAAATCCCAGCTGTTGGAGGAACAGCCGAGGAAACCACAC
CGGCCATGGCTCCAAAGGAAGCGAAACCACAAGATGATCCACCACGAGAAGCGCAGAACCAACCGGGCAAGATTCAGCTG
ACCGAAGAGCAGAGGGCGCGCATGGAGGCAAACCGGCTCAGGGCCTTGGAGAGGGCAGCAGCGGCGCGTGCTCGCGCCTC
GCAGCCGGCATAGCTAGCAAGCAACCAGCTACATACTCAACTCAGTTACCTGCATCTTCGCTTGTTATTCCCTTGCATTG
CATTGCACCTGTCGACCCCTGTGATGGATGTATTACATGGCACAGTAATCAGCACAACTCTGTTGTTATTGTGCTACTGC
CTGAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis