Browse Element(s) Details


Os.54409.1.S1_at

Description gb:AK105104.1
DB_XREF= gi:32990313
TID=Os.54409.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D11, full insert sequence.
FL= gb:AK105104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0927011/11ubiquitin-specific protease 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09280Os.5252.1.S1_at11/113+4826358..4832948Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os03g09290NANA3+4834333..4836648expressed protein
LOC_Os03g09300NANA3+4837255..4839490Pumilio-family RNA binding repeat containing protein
LOC_Os03g09310Os.6725.1.S1_at11/113+4841301..4845851expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54409.1.S1_at--289--2451Chr03:4822900..4822924 (25 bp)
AAAATCAGCCTGCAGTTTCACCTGA
LOC_Os03g09270
Os.54409.1.S1_at--1070--10371Chr03:4822980..4823004 (25 bp)
TTTTGACACCAAATACCCAGCTTAC
LOC_Os03g09270
Os.54409.1.S1_at--251--7011Chr03:4823028..4823052 (25 bp)
GTACTAACTTGCTCTCATGACATGC
LOC_Os03g09270
Os.54409.1.S1_at--1025--2251Chr03:4823091..4823115 (25 bp)
AAATACATGGCGGTTCTGCACTTGC
LOC_Os03g09270
Os.54409.1.S1_at--238--8971Chr03:4823128..4823152 (25 bp)
TGAAAAGTTTTGTCTGCCCCTTATC
LOC_Os03g09270
Os.54409.1.S1_at--108--331Chr03:4823156..4823180 (25 bp)
ATACTCTGTTTCCACCTTAGGGTGT
LOC_Os03g09270
Os.54409.1.S1_at--1132--7711Chr03:4823175..4823199 (25 bp)
GGGTGTGCGTCCTGCTGTTGTATCA
LOC_Os03g09270
Os.54409.1.S1_at--489--571Chr03:4823250..4823274 (25 bp)
ATCCTTGTACTACCTTTTAGTGGCT
LOC_Os03g09270
Os.54409.1.S1_at--445--1891Chr03:4823337..4823361 (25 bp)
ACGTTGTGGGATCTGCAATTCTTCA
LOC_Os03g09270
Os.54409.1.S1_at--156--9051Chr03:4823373..4823397 (25 bp)
TGCAGCTTTTCTCCCGTTTATTTGT
LOC_Os03g09270
Os.54409.1.S1_at--1047--2651Chr03:4823419..4823443 (25 bp)
AAGCCTTTCCTTGGGTGCATGCATA
LOC_Os03g09270
Target Sequence 
AAAATCAGCCTGCAGTTTCACCTGATTCCAAACAAAGGTTATTGCATGTATGCAATGTCGTTAATATTTTATTTTGTCCA
TTTTGACACCAAATACCCAGCTTACATTTAAGTTTCCTAATCAGAAATGTACTAACTTGCTCTCATGACATGCAGGAGTA
TGCTGAGGATTAAGTCACAACAAGTTGTTCTAAATACATGGCGGTTCTGCACTTGCCGTCACCGTGGGTGAAAAGTTTTG
TCTGCCCCTTATCTCCATACTCTGTTTCCACCTTAGGGTGTGCGTCCTGCTGTTGTATCAGCATGCCAAAATGAGCGGAA
AAAGAGGGTATGTAATTATTTAGGTAGTTAATCCTTGTACTACCTTTTAGTGGCTATGCAGAGGTTTTATGAAGGAGAGC
CGGAAACTATATGTAGAGCAGTTCGCTGTGTGTTCTTACGTTGTGGGATCTGCAATTCTTCAGATCTCATCCCTGCAGCT
TTTCTCCCGTTTATTTGTTTGTGGGCTCGCCCCTTTCCTAAGCCTTTCCTTGGGTGCATGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis