Browse Element(s) Details


Os.54416.1.S1_at

Description gb:AK105122.1
DB_XREF= gi:32990331
TID=Os.54416.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C03, full insert sequence.
FL= gb:AK105122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g414506/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.2.S1_s_at8/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.6.S1_s_at5/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930OsAffx.3425.1.S1_at1/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40940OsAffx.31018.3.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940OsAffx.31018.2.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940Os.50578.1.S1_x_at7/112+24801452..24805997hypothetical protein
LOC_Os02g40950Os.45774.1.S1_at11/112+24806724..24809466transposon protein, putative, unclassified
LOC_Os02g41450Os.54416.1.S1_at6/112+24810863..24813949No apical meristem protein
LOC_Os02g41460NANA2+24824827..24826182expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010014biological_processmeristem initiation
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54416.1.S1_at--347--10492Chr10:11485719..11486148 (25 bp)
TTCACCGGCTCGATGTCGACGACGA
NONE
Os.54416.1.S1_at--178--5791Chr02:24813634..24813658 (25 bp)
GACGACGACGTTGTCACAGCTACAG
LOC_Os02g41450
Os.54416.1.S1_at--1060--2071Chr02:24813781..24813805 (25 bp)
ACATTACCAATACGGCGGCGCGGTT
LOC_Os02g41450
Os.54416.1.S1_at--942--2071Chr02:24813866..24813890 (25 bp)
ACATACTTGGACTTGGGCTTCGAGC
LOC_Os02g41450
Os.54416.1.S1_at--34--3351Chr02:24813898..24813922 (25 bp)
CACGGCGAGTGTTCTTGGAGGCATC
LOC_Os02g41450
Os.54416.1.S1_at--646--8551Chr02:24813913..24813937 (25 bp)
TGGAGGCATCAGGTCGTTCCCGCAG
LOC_Os02g41450
Os.54416.1.S1_at--351--5211Chr02:24813943..24813967 (25 bp)
GAATTGATCGATCCCGGCACTAAAC
NONE
Os.54416.1.S1_at--178--311Chr02:24813999..24814023 (25 bp)
ATACGCGTCATATACAGGGTCCGAT
NONE
Os.54416.1.S1_at--612--7731Chr02:24814070..24814094 (25 bp)
GGTTTACGTCGTCTTAGAGTATCTG
NONE
Os.54416.1.S1_at--391--10031Chr02:24814084..24814108 (25 bp)
TAGAGTATCTGTCCGGGTTTCGAAA
NONE
Os.54416.1.S1_at--177--831Chr02:24814141..24814165 (25 bp)
ATGGATCATCGCGTATGTGTAAGGC
NONE
Target Sequence 
TTCACCGGCTCGATGTCGACGACGACGTTGTCACAGCTACAGCCGCCGGACCACCGCCGCCATGCAGCCGCAGCGGCGGG
CGGCTACTACGTCGGTTCCCAGCAGCTGGCTGCTGGCTACGACTCCGCCGCCGGCTTCGCGAACCCCACGCAGCCGGCGG
TGCCACATTACCAATACGGCGGCGCGGTTATCGGGTTCCCGGAGGAGTTCGGCGGCGGCGGCGGGGTAGCAGACGAGTAC
GGGTTTGGGACATACTTGGACTTGGGCTTCGAGCTCGACGACACGGCGAGTGTTCTTGGAGGCATCAGGTCGTTCCCGCA
GGGTTGGAATTGATCGATCCCGGCACTAAACAAATTTATTTTGCGTACGTACGTACGTACGTATACGCGTCATATACAGG
GTCCGATCGTTGAATTAATTAATTCCATTAATTGTTTATACAGAGTTTGTATAGGTTTACGTCGTCTTAGAGTATCTGTC
CGGGTTTCGAAAGATTGTGTGAGCTTGAGATATGATCTCAATTGATGGATCATCGCGTATGTGTAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis