Browse Element(s) Details


Os.54436.1.S1_at

Description gb:AK105161.1
DB_XREF= gi:32990370
TID=Os.54436.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C12, full insert sequence.
FL= gb:AK105161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6382011/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0019204molecular_functionnucleotide phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54436.1.S1_at--572--7971Chr01:37352427..37352451 (25 bp)
GGATCTGACTTTTGACATTTGCACA
LOC_Os01g63820
Os.54436.1.S1_at--144--9891Chr01:37352391..37352415 (25 bp)
TACTAAAGATGCCTCTGTGTTTCGA
LOC_Os01g63820
Os.54436.1.S1_at--1057--8671Chr01:37352376..37352400 (25 bp)
TGTGTTTCGAGGTTGCTGCCTCAAG
LOC_Os01g63820
Os.54436.1.S1_at--568--2671Chr01:37352343..37352367 (25 bp)
AAGCCCGAATCACATTCTCCTAGAA
LOC_Os01g63820
Os.54436.1.S1_at--535--5271Chr01:37352321..37352345 (25 bp)
GAATGCTCCACCAGCATGACTTTGT
LOC_Os01g63820
Os.54436.1.S1_at--49--9831Chr01:37352237..37352261 (25 bp)
TAAAATTCTACCTGTTTCAGCCGGC
LOC_Os01g63820
Os.54436.1.S1_at--924--9651Chr01:37352221..37352245 (25 bp)
TCAGCCGGCCTCATAATATTGTGCA
LOC_Os01g63820
Os.54436.1.S1_at--904--6631Chr01:37352188..37352212 (25 bp)
GTTGTTCCTGAAGTGGCCAAAACAC
LOC_Os01g63820
Os.54436.1.S1_at--1134--7371Chr01:37352131..37352155 (25 bp)
GTGAGCTTCAAGTCTGCTGACATGA
LOC_Os01g63820
Os.54436.1.S1_at--376--7031Chr01:37352097..37352121 (25 bp)
GTAAATATACTCCTTAACATCGACT
LOC_Os01g63820
Os.54436.1.S1_at--329--191Chr01:37351978..37352002 (25 bp)
ATTTACTTCTAATCTTACTCCACCT
LOC_Os01g63820
Target Sequence 
GGATCTGACTTTTGACATTTGCACAATTATTGGGAATACTAAAGATGCCTCTGTGTTTCGAGGTTGCTGCCTCAAGCCTG
CAACAAGCCCGAATCACATTCTCCTAGAATGCTCCACCAGCATGACTTTGTCCAAAATTAATGTCCCAACATTAATTGCA
CTAGCAAGCTTGAACCAAGAAGCTGCCTTATAAAATTCTACCTGTTTCAGCCGGCCTCATAATATTGTGCAAATTTGAAG
TTGTTCCTGAAGTGGCCAAAACACCCCCGTAAACTAGGTTTGATATTTAATGGCAGGTGAGCTTCAAGTCTGCTGACATG
AACATGAGATGTAAATATACTCCTTAACATCGACTAAAAGGGGGGACATTCCTATGCACACANGCTTNAGGTGCACTTTG
TGCACANCAACTAACCAATGTCACCAGAAANTCTTAAATAAAATTGTTCATTTACTTCTAATCTTACTCCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis