Browse Element(s) Details


Os.54482.1.S1_x_at

Description gb:AK105293.1
DB_XREF= gi:32990502
TID=Os.54482.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G09, full insert sequence.
FL= gb:AK105293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g326907/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32670OsAffx.24542.1.S1_x_at9/112+19369601..19379945expressed protein
LOC_Os02g32680NANA2+19383169..19383654lectin receptor-type protein kinase, putative
LOC_Os02g32690OsAffx.24543.1.S1_at11/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_x_at7/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690OsAffx.32212.1.A1_at2/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_at1/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32700Os.20902.1.A1_at1/112+19417381..19418082Autophagy-related protein 8 precursor, putative
LOC_Os02g32710OsAffx.2833.1.S1_at11/112+19425060..19426795hypothetical protein
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54482.1.S1_x_at--526--4111Chr02:19403128..19403152 (25 bp)
CGAACAGTTGTGTGCACCATTCACC
LOC_Os02g32690
Os.54482.1.S1_x_at--244--6231NONE
GAGGCCTTTGATGAGCTTTTGCTAA
NONE
Os.54482.1.S1_x_at--998--251Chr02:19402089..19402452 (25 bp)
ATATGCTGGGCCTCTTGGATTCCAT
LOC_Os02g32690
Os.54482.1.S1_x_at--269--8751Chr02:19402401..19402424 (24 bp)
TGTAACGTCATCCACTATTTCGAGA
LOC_Os02g32690
Os.54482.1.S1_x_at--412--1571Chr02:19400980..19401004 (25 bp)
AGCTCTAGGCACGAGTGATCTCCAT
LOC_Os02g32690
Os.54482.1.S1_x_at--255--5971Chr02:19400881..19400905 (25 bp)
GAGAAGTCCTTCCTACAACCTAGTG
LOC_Os02g32690
Os.54482.1.S1_x_at--697--2451Chr02:19400842..19400866 (25 bp)
AACAATCTCCTGCATTGTCTTCGGT
LOC_Os02g32690
Os.54482.1.S1_x_at--133--4951NONE
GCATTGTTCTGGTAGCAAGGCGACA
NONE
Os.54482.1.S1_x_at--551--2951Chr02:19400801..19400940 (25 bp)
AAGGCGACATCAACCACATGTATGT
LOC_Os02g32690
Os.54482.1.S1_x_at--472--6871NONE
GTATTGTGAACCATCGCTATGTCCA
NONE
Os.54482.1.S1_x_at--146--3551NONE
CATCGCTATGTCCATCCTTGATAAA
NONE
Target Sequence 
CGAACAGTTGTGTGCACCATTCACCAACCAAGTATTGAAATATTTGAGGCCTTTGATGAGCTTTTGCTAATGAAAAGGGG
TGGAGAGTTGATATATGCTGGGCCTCTTGGATTCCATTCATGTAACGTCATCCACTATTTCGAGACAATTCCTGGGGTAC
CCAAGATCAAGGATAACTACAACCCATCAACATGGATGCTCGAAGTTACTTGTGCATCTATGGAAGCTCAATTGGGAGTA
GAATTTGCCCAAATTTACAGGGAATCAACCATGTGCAAGGACAAGGATGCTCTAGTGAAGAGTTTGAGCAAACCAGCTCT
AGGCACGAGTGATCTCCATTTCCCAACACGGTTTCCACAGAGGTTTGGGGAGCAACTAAAAGCTTGCATCTGGAAGCAGT
GTTTGTCATATTGGAGAAGTCCTTCCTACAACCTAGTGCGAATTGTATTCATAACAATCTCCTGCATTGTCTTCGGTGCA
TTGTTCTGGTAGCAAGGCGACATCAACCACATGTATGTATTGTGAACCATCGCTATGTCCATCCTTGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54482.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis