Browse Element(s) Details


Os.54483.1.S1_at

Description gb:AK105294.1
DB_XREF= gi:32990503
TID=Os.54483.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G10, full insert sequence.
FL= gb:AK105294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3121011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31170Os.55757.1.S1_s_at11/119+18748303..18751487expressed protein
LOC_Os09g31170OsAffx.30106.1.S1_at6/119+18748303..18751487expressed protein
LOC_Os09g31180Os.9253.1.S1_s_at11/119+18751264..1875319760S ribosomal protein L9, putative, expressed
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os09g31210Os.54483.1.S1_at11/119+18768773..18770493Protein kinase domain containing protein, expressed
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54483.1.S1_at--514--7891Chr09:18770100..18770124 (25 bp)
GGTTCAGCGTGGTAGAGTATTTCAA
LOC_Os09g31210
Os.54483.1.S1_at--992--2211Chr09:18770124..18770148 (25 bp)
ACAAGCTTCACGAGCCTTCGCCGGA
LOC_Os09g31210
Os.54483.1.S1_at--210--10731Chr09:18770165..18770189 (25 bp)
TTGACGGAGTTCTTGCCGGAGTTCT
LOC_Os09g31210
Os.54483.1.S1_at--891--8031Chr09:18770182..18770206 (25 bp)
GGAGTTCTGACGTCCGGTCTCCGGT
LOC_Os09g31210
Os.54483.1.S1_at--753--7811Chr09:18770197..18770221 (25 bp)
GGTCTCCGGTGTTCCACTCGAACTA
LOC_Os09g31210
Os.54483.1.S1_at--648--3791Chr09:18770213..18770237 (25 bp)
CTCGAACTACAGTATTTCTCTCTTT
LOC_Os09g31210
Os.54483.1.S1_at--1096--1951Chr09:18770385..18770409 (25 bp)
ACTGTAAAATCCGAATCCTTTTCTG
LOC_Os09g31210
Os.54483.1.S1_at--84--571Chr09:18770399..18770423 (25 bp)
ATCCTTTTCTGCTCACTAGAGGCTA
LOC_Os09g31210
Os.54483.1.S1_at--716--5511Chr09:18770432..18770456 (25 bp)
GAAAATACTGTACTTCACAAGGGTT
LOC_Os09g31210
Os.54483.1.S1_at--456--7651Chr09:18770452..18770476 (25 bp)
GGGTTAATCCCTGCAGTCTAATTGA
LOC_Os09g31210
Os.54483.1.S1_at--594--7131Chr09:18770467..18770491 (25 bp)
GTCTAATTGACTACGGTACAGTGTT
LOC_Os09g31210
Target Sequence 
GGTTCAGCGTGGTAGAGTATTTCAACAAGCTTCACGAGCCTTCGCCGGAGCCGGAGGAGGAGGAGTTGACGGAGTTCTTG
CCGGAGTTCTGACGTCCGGTCTCCGGTGTTCCACTCGAACTACAGTATTTCTCTCTTTTTTTCACTTTCACCTCAAAAAA
AATCATTAATTATGTGATCCTGTGGTGAAAGGGGTAAACTAAAATTGAGTAGAAGAGATTGTACTGTAAAAATTGTGACA
TGGTAAGGGTAGGTTTGTGAAATAAGGGTAACTATTTCGGTAGGGGACTGTAAAATCCGAATCCTTTTCTGCTCACTAGA
GGCTAGGGTGACTGAAAATACTGTACTTCACAAGGGTTAATCCCTGCAGTCTAATTGACTACGGTACAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis