Browse Element(s) Details


Os.54525.1.S1_x_at

Description gb:AK105519.1
DB_XREF= gi:32990728
TID=Os.54525.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F08, full insert sequence.
FL= gb:AK105519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0885011/11Cytochrome P450 family protein, expressed
LOC_Os01g624801/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08810Os.11111.1.S1_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08810Os.11111.1.S2_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08820NANA5+4846102..4847230expressed protein
LOC_Os05g08830OsAffx.14600.1.S1_at11/115+4853930..4854130expressed protein
LOC_Os05g08840Os.26495.1.S1_at11/115+4855642..4861593dnaK protein, expressed
LOC_Os05g08850Os.54525.1.S1_x_at11/115+4863414..4865163Cytochrome P450 family protein, expressed
LOC_Os05g08860Os.51345.1.S1_at11/115+4873130..4873834expressed protein
LOC_Os05g08860Os.6152.1.S1_at1/115+4873130..4873834expressed protein
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54525.1.S1_x_at--338--8111Chr05:4864615..4864639 (25 bp)
GGACACGGGTGGTGTTCTGCCTCTA
LOC_Os05g08850
Os.54525.1.S1_x_at--729--4411Chr05:4864744..4864768 (25 bp)
GCCAGGAGCCGAGCTACAAGTTCGC
LOC_Os05g08850
Os.54525.1.S1_x_at--442--9431Chr05:4864798..4864822 (25 bp)
TCGGCAAGGACCTCGGGCTCAGCAA
LOC_Os05g08850
Os.54525.1.S1_x_at--206--7372Chr05:4864848..4864872 (25 bp)
GTGTACAACTTCACGGTGGAGCTCG
LOC_Os05g08850
Os.54525.1.S1_x_at--895--8431Chr05:4864878..4864902 (25 bp)
GGCCATGTCGTGGAGCCCAAGGACT
LOC_Os05g08850
Os.54525.1.S1_x_at--181--2931Chr05:4864896..4864920 (25 bp)
AAGGACTCGGTGGTGCTCCACACCA
LOC_Os05g08850
Os.54525.1.S1_x_at--918--1431Chr05:4864921..4864945 (25 bp)
AGAACGGCCTCATGGTCAGGGTCAA
LOC_Os05g08850
Os.54525.1.S1_x_at--813--1531Chr05:4864958..4864982 (25 bp)
AGCTTGACAGCTTGAGGGAGACATT
LOC_Os05g08850
Os.54525.1.S1_x_at--338--7631Chr05:4864973..4864997 (25 bp)
GGGAGACATTGTGTTCCAGAATTCA
LOC_Os05g08850
Os.54525.1.S1_x_at--1146--5591Chr05:4865037..4865061 (25 bp)
GAAATTAAGCAAATCTCACTCCATA
LOC_Os05g08850
Os.54525.1.S1_x_at--727--1171Chr05:4865133..4865157 (25 bp)
AGTAACACCACTTGACACTTGCTTA
LOC_Os05g08850
Target Sequence 
GGACACGGGTGGTGTTCTGCCTCTACGCCATGGGGAGGGTGGAGGGGATATGGGGCAGCGACTGCCGGGAGTTCCGGCCG
GAGCGGTGGCTGTCCACCGGCGACGGCGACGGCGGCGCCGGCAAGGTCCGCCAGGAGCCGAGCTACAAGTTCGCGGCGTT
CAACGCCGGGCCGAGGAGCTGCCTCGGCAAGGACCTCGGGCTCAGCAACATCAAGATCGCCGCCGCCGCCATCGTGTACA
ACTTCACGGTGGAGCTCGTCGCCGGCCATGTCGTGGAGCCCAAGGACTCGGTGGTGCTCCACACCAAGAACGGCCTCATG
GTCAGGGTCAAGAGGAGGGAGACAGCTTGACAGCTTGAGGGAGACATTGTGTTCCAGAATTCAGAGCAAAAGTATAGAGA
AAAATAATGGAGTGTTAGCAAGGAAATTAAGCAAATCTCACTCCATAGATTCTGATTTATACCATATATAGAAAGTATGT
TTGATTCAGTTAAGAATTGTAATTATTCATGTGACAAGAGTAACACCACTTGACACTTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54525.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis