Browse Element(s) Details


Os.54527.1.S1_at

Description gb:AK105521.1
DB_XREF= gi:32990730
TID=Os.54527.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F10, full insert sequence.
FL= gb:AK105521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1957011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19530NANA9+11682894..11689049transposon protein, putative, unclassified
LOC_Os09g19540NANA9+11689688..11692924transposon protein, putative, unclassified
LOC_Os09g19550OsAffx.29925.1.S1_at11/119+11699471..11701661SNARE domain containing protein
LOC_Os09g19560Os.18453.1.S1_at11/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19560Os.14894.1.A1_at1/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19570Os.54527.1.S1_at11/119+11706234..11709471expressed protein
LOC_Os09g19570Os.18476.1.S1_at1/119+11706234..11709471expressed protein
LOC_Os09g19580OsAffx.20733.1.A1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19580Os.45173.3.S1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19590NANA9+11716007..11717189hypothetical protein
LOC_Os09g19600OsAffx.21897.5.S1_x_at3/119+11718719..11721661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19610OsAffx.20387.1.S1_x_at1/119+11723396..11726173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19620NANA9+11726504..11728083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19630OsAffx.31069.1.S1_x_at1/119+11729926..11732076retrotransposon protein, putative, unclassified
LOC_Os09g19640Os.10755.1.S1_at11/119+11734361..11739274holocarboxylase synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54527.1.S1_at--824--10071Chr09:11708311..11708335 (25 bp)
TAGTGTTGGTTTCTTTGCTGGTGAC
LOC_Os09g19570
Os.54527.1.S1_at--1088--5871Chr09:11708338..11708362 (25 bp)
GAGCGAAATTGACAGTCTGCTTCTT
LOC_Os09g19570
Os.54527.1.S1_at--864--3531Chr09:11708434..11708458 (25 bp)
CATCCTTATGGCTGAGACTGTCTAT
LOC_Os09g19570
Os.54527.1.S1_at--1045--4291Chr09:11708474..11708498 (25 bp)
CCTAATCTCTACAGGCTCATCAAGA
LOC_Os09g19570
Os.54527.1.S1_at--911--2851Chr09:11708592..11708615 (24 bp)
AAGTGCCTGCGCTACCCTGGAGGTA
LOC_Os09g19570
Os.54527.1.S1_at--546--9891Chr09:11708642..11708666 (25 bp)
TACTTCGGAGTAGGTGGTGGCACAA
LOC_Os09g19570
Os.54527.1.S1_at--506--2931Chr09:11708665..11708689 (25 bp)
AAGGCACTTTGTTCGCTTGGTTACA
LOC_Os09g19570
Os.54527.1.S1_at--351--1151Chr09:11709176..11709200 (25 bp)
AGTCCGACCTACTTGCTGAAGTTGC
LOC_Os09g19570
Os.54527.1.S1_at--158--5711Chr09:11709249..11709273 (25 bp)
GACTAGTATTCTGCTTGTGATCGTT
LOC_Os09g19570
Os.54527.1.S1_at--916--8731Chr09:11709290..11709314 (25 bp)
TGTACTGGCTCCATATTGGTCGAGT
LOC_Os09g19570
Os.54527.1.S1_at--279--6051Chr09:11709367..11709391 (25 bp)
GAGATAATTGCTACCTCTTTTCAGA
LOC_Os09g19570
Target Sequence 
TAGTGTTGGTTTCTTTGCTGGTGACTGGAGCGAAATTGACAGTCTGCTTCTTCGTGGAGATGCTGACCTGGATAAATCAA
CCAACAGTCATGAAAACGATACAGCGTATAATGGCTATGATATCATCCTTATGGCTGAGACTGTCTATGCAGTATCTTCC
CTCCCTAATCTCTACAGGCTCATCAAGAAGTGCCTGCGCTACCCTGGAGGTATAGTTTACATGGCGGGTAAAAAGCATTA
CTTCGGAGTAGGTGGTGGCACAAGGCACTTTGTTCGCTTGGTTACAGAAGATGGGGCCATGCAGTCCGACCTACTTGCTG
AAGTTGCTGATGGATCATCGAATGTTCGGGAGGTTTGGAAATTATCGTTCAAATAGACTAGTATTCTGCTTGTGATCGTT
GAAGAAACCACAAACATGTACTGGCTCCATATTGGTCGAGTGGAAGCCTTAGTTTAGGTGTTTCTTGTTCTATTAATGTA
CTGGGTCAGTTCTGAGATAATTGCTACCTCTTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis