Browse Element(s) Details


Os.54550.1.S1_at

Description gb:AK105579.1
DB_XREF= gi:32990788
TID=Os.54550.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E02, full insert sequence.
FL= gb:AK105579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g110501/11Cyclin-dependent kinase inhibitor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein
LOC_Os06g11050OsAffx.15366.1.S1_at9/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050Os.54550.1.S1_at1/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060Os.18657.1.S1_at11/116+5799189..5799850expressed protein
LOC_Os06g11070Os.23461.1.A1_at11/116+5806277..5810130expressed protein
LOC_Os06g11070OsAffx.4796.1.S1_s_at11/116+5806277..5810130expressed protein
LOC_Os06g11080OsAffx.4797.1.S1_at11/116+5811592..5812001hypothetical protein
LOC_Os06g11090Os.49572.1.A1_at11/116+5812498..5814197esterase, putative, expressed
LOC_Os06g11100OsAffx.22063.1.S1_at1/116+5816259..5819852retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54550.1.S1_at--846--9691Chr11:5234477..5234501 (25 bp)
TCAACAAACACATTCCAAAGCTCCG
NONE
Os.54550.1.S1_at--789--9291Chr11:5234456..5234480 (25 bp)
TCCGCCACTCATGTTAGCTTCGAAA
NONE
Os.54550.1.S1_at--1025--6751Chr11:5234444..5234468 (25 bp)
GTTAGCTTCGAAACTACATGCCAAA
NONE
Os.54550.1.S1_at--424--591Chr11:5234427..5234451 (25 bp)
ATGCCAAAGCAAAACACAACCGGTG
NONE
Os.54550.1.S1_at--402--6791Chr11:5234354..5234378 (25 bp)
GTTAGTTTCTGGACCTATCTCTTTA
NONE
Os.54550.1.S1_at--789--5831Chr11:5234343..5234367 (25 bp)
GACCTATCTCTTTAACTTATTCCAT
NONE
Os.54550.1.S1_at--777--3051Chr11:5234275..5234299 (25 bp)
AATCTGGGATCAATAGACCCTTTGA
NONE
Os.54550.1.S1_at--592--5571Chr11:5234178..5234202 (25 bp)
GAAAGTTACACACGAGTCATTTGAT
NONE
Os.54550.1.S1_at--847--3357Chr02:30462947..30462967 (21 bp)
CACCTCTTGCTATTTTTCCTACTAA
NONE
Os.54550.1.S1_at--484--8151Chr11:5233987..5234011 (25 bp)
GGAAATCCTTTACCAATCATATGAA
NONE
Os.54550.1.S1_at--639--7791Chr11:5233957..5233981 (25 bp)
GGTCCACTTATTTTCGTTCCTATGA
NONE
Target Sequence 
TCAACAAACACATTCCAAAGCTCCGCCACTCATGTTAGCTTCGAAACTACATGCCAAAGCAAAACACAACCGGTGAATCG
TAGAAAGAAATATACAAAAATAAAATAAAAGTTACAAACATATGTTAGTTTCTGGACCTATCTCTTTAACTTATTCCATT
ATTCGTTACAGAAAAAAATTTTAGCTGAAATATAGCACTGGGAATCTGGGATCAATAGACCCTTTGATTCACAAGATAAG
AAAAACACATGAATTGAAGTTGTATGCTTCTCAAAATTTACATGAATCAACAAACACATGAAAGTTACACACGAGTCATT
TGATAGTGTCATGGGAAAAACAAAGAAAAATTCAAAAAAAAATCACACCTCTTGCTATTTTTCCTACTAAATGTGAATTA
TAGGAATATATAATCCTATGGAAAGTTTTCTTTCTTTCCTATGAATCAAAGGGACACGTATGAAACAATCTATAAGAAGT
TGAATCCTATGGAAATCCTTTACCAATCATATGAATCAAAGGTCCACTTATTTTCGTTCCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis