Browse Element(s) Details


Os.54555.1.S1_at

Description gb:AK105598.1
DB_XREF= gi:32990807
TID=Os.54555.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A03, full insert sequence.
FL= gb:AK105598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0706010/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os05g07060Os.54555.1.S1_at10/115+3693797..3694910Fasciclin domain containing protein, expressed
LOC_Os05g07070Os.19023.1.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.1.S1_s_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_s_at10/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07080OsAffx.4267.1.S1_at11/115+3704516..3707449D-mannose binding lectin family protein
LOC_Os05g07090Os.12993.1.S1_at11/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090Os.26897.1.S1_at3/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090OsAffx.29424.1.S1_at2/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54555.1.S1_at--304--8051Chr05:3694008..3694032 (25 bp)
GGAGATTGCCAATTCACCATGGGAT
LOC_Os05g07060
Os.54555.1.S1_at--894--10671Chr05:3694003..3694027 (25 bp)
TTGCCAATTCACCATGGGATTTTTT
LOC_Os05g07060
Os.54555.1.S1_at--976--3611Chr05:3693925..3693949 (25 bp)
CTTGTTCTTTTTGTATGATTTGGTA
LOC_Os05g07060
Os.54555.1.S1_at--449--171Chr05:3693898..3693922 (25 bp)
ATTTTGTTTTGTCCGTGTCCTATGT
LOC_Os05g07060
Os.54555.1.S1_at--709--7251Chr05:3693888..3693912 (25 bp)
GTCCGTGTCCTATGTTGATCTTTTA
LOC_Os05g07060
Os.54555.1.S1_at--95--6411Chr05:3693872..3693896 (25 bp)
GATCTTTTAGAGTTTTTCACTGTGT
LOC_Os05g07060
Os.54555.1.S1_at--113--10531Chr05:3693857..3693881 (25 bp)
TTCACTGTGTGTTGTATGTCTTTTC
LOC_Os05g07060
Os.54555.1.S1_at--616--6631Chr05:3693847..3693871 (25 bp)
GTTGTATGTCTTTTCGTGGTTGTTA
LOC_Os05g07060
Os.54555.1.S1_at--583--7151Chr05:3693840..3693864 (25 bp)
GTCTTTTCGTGGTTGTTATATATGT
LOC_Os05g07060
Os.54555.1.S1_at--479--2871Chr05:3693809..3693833 (25 bp)
AAGTGTTTGTATATTGTGGTATCTA
LOC_Os05g07060
Os.54555.1.S1_at--439--31Chr05:3693797..3693821 (25 bp)
ATTGTGGTATCTAATTTGTTACTTG
NONE
Target Sequence 
GGAGATTGCCAATTCACCATGGGATTTTTTTTTCTTTTAATTTTGTGGAAAGGTGTTAAAATTGTTTTGTTGTTTTGGTT
TTTCTTGTTCTTTTTGTATGATTTGGTAGGATTTTGTTTTGTCCGTGTCCTATGTTGATCTTTTAGAGTTTTTCACTGTG
TGTTGTATGTCTTTTCGTGGTTGTTATATATGTAATAAGAAGTGTTTGTATATTGTGGTATCTAATTTGTTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis