Browse Element(s) Details


Os.54631.1.A1_at

Description gb:AK106312.1
DB_XREF= gi:32991521
TID=Os.54631.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D06, full insert sequence.
FL= gb:AK106312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g054208/11Flavonol 3-O-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05440Os.50940.1.S1_a_at11/117+2500963..2506064retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05450OsAffx.28290.2.S1_at10/117+2507589..2508971Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54631.1.A1_at--103--8371Chr07:2488287..2488311 (25 bp)
GGCGTGCCGGCCATTCTTCGGTGAC
LOC_Os07g05420
Os.54631.1.A1_at--684--3591Chr07:2488298..2488322 (25 bp)
CATTCTTCGGTGACCAGCACATGAA
LOC_Os07g05420
Os.54631.1.A1_at--802--7751Chr07:2488306..2488330 (25 bp)
GGTGACCAGCACATGAACGCACGCG
LOC_Os07g05420
Os.54631.1.A1_at--64--10031Chr07:2488479..2488503 (25 bp)
TAGAGCACGGGAGCTTCAGGCCATG
LOC_Os07g05420
Os.54631.1.A1_at--896--4631NONE
GCGTTCGAGCCCGACGGTGAATCGA
NONE
Os.54631.1.A1_at--1118--5851NONE
GAGCCCGACGGTGAATCGACGAAAA
NONE
Os.54631.1.A1_at--821--5251NONE
GAATCGACGAAAAACTTGCACAAAT
NONE
Os.54631.1.A1_at--245--10251Chr07:2488555..2488579 (25 bp)
TTTGTCGAAATTGTTTGTGCCCGTC
LOC_Os07g05420
Os.54631.1.A1_at--894--7271Chr07:2488571..2488595 (25 bp)
GTGCCCGTCGGGTGTGATCGATACA
LOC_Os07g05420
Os.54631.1.A1_at--49--3531Chr07:2488594..2488618 (25 bp)
CATGCATGGCATCGATTTTTAGAAC
LOC_Os07g05420
Os.54631.1.A1_at--45--751Chr07:2488660..2488684 (25 bp)
ATGTTATATATCACCTTAACCTATA
LOC_Os07g05420
Target Sequence 
GGCGTGCCGGCCATTCTTCGGTGACCAGCACATGAACGCACGCGCCGTGGCGCGCCTGTGGTGCTTCGGCATGGCGTTCG
ACNNCGACAACGACGGCGGCGGCAAGCCGTCGATGATGACGCGCNNNNNCGTGGCAGAGGCGGTGGCGTCGCTGCTCGCC
GGAGAGGAGGAAGGGGCCCGGATGATGAGGGCTAGAGCACGGGAGCTTCAGGCCATGGTGGTCTCGGCGTTCGAGCCCGA
CGGTGAATCGACGAAAAACTTGCACAAATTTGTCGAAATTGTTTGTGCCCGTCGGGTGTGATCGATACATGCATGGCATC
GATTTTTAGAACTTCAGAAGAAATTAAAAATTTTAGAACGATAAGCTACAATAATGTTATATATCACCTTAACCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54631.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis