Browse Element(s) Details


Os.54638.1.S1_at

Description gb:AK106341.1
DB_XREF= gi:32991550
TID=Os.54638.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G09, full insert sequence.
FL= gb:AK106341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g295209/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein
LOC_Os11g29490Os.52639.1.S1_at11/1111+16606016..16611363E1-E2 ATPase family protein, expressed
LOC_Os11g29500Os.53478.1.S1_at10/1111+16613305..16613976expressed protein
LOC_Os11g29510OsAffx.31202.1.S1_at11/1111+16615145..16618901Protein kinase domain containing protein
LOC_Os11g29520Os.54766.1.S1_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54766.1.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54638.1.S1_at9/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_at8/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29530OsAffx.29419.3.S1_at2/1111+16633186..16639146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29540OsAffx.13772.1.S1_x_at1/1111+16640249..16641487hypothetical protein
LOC_Os11g29550OsAffx.19069.1.S1_at11/1111+16642440..16644195hypothetical protein
LOC_Os11g29560Os.50255.1.S1_at3/1111+16646891..16649818retrotransposon protein, putative, unclassified
LOC_Os11g29570NANA11+16650148..16655953retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54638.1.S1_at--742--3011Chr11:16624361..16624385 (25 bp)
AATGCTCTTAACAGACTACACTTGA
LOC_Os11g29520
Os.54638.1.S1_at--719--2011Chr11:16624347..16624371 (25 bp)
ACTACACTTGAGGAGGTATGCGGTT
LOC_Os11g29520
Os.54638.1.S1_at--729--10771Chr11:16624324..16624348 (25 bp)
TTGGTGCAATTTGCCTTAACCCTCA
LOC_Os11g29520
Os.54638.1.S1_at--724--9671Chr11:16624302..16624326 (25 bp)
TCACCCTCCTCTTGCTTAAAGTAAT
LOC_Os11g29520
Os.54638.1.S1_at--293--211Chr11:16624276..16624300 (25 bp)
ATTTGAATTTCCCTGCAGAGTGCAG
LOC_Os11g29520
Os.54638.1.S1_at--340--2771Chr11:16624137..16624161 (25 bp)
AAGACCACTATGTACGCATCAACTC
LOC_Os11g29520
Os.54638.1.S1_at--362--4971Chr11:16624122..16624146 (25 bp)
GCATCAACTCATGACTGGTGACAAA
LOC_Os11g29520
Os.54638.1.S1_at--472--2971Chr11:16624099..16624123 (25 bp)
AATGTTAACCCTTTGATTTCTGGAG
LOC_Os11g29520
Os.54638.1.S1_at--746--6851Chr11:16624024..16624048 (25 bp)
GTTTGCTTTGAGATCTATGCAGTTA
LOC_Os11g29520
Os.54638.1.S1_at--505--1031Chr11:16623854..16623878 (25 bp)
AGTGTTTACCATGTACTAGTATACT
NONE
Os.54638.1.S1_at--320--3971Chr11:16623795..16623819 (25 bp)
CGGTTTGAATCTTAGCATCGGGCGA
NONE
Target Sequence 
AATGCTCTTAACAGACTACACTTGAGGAGGTATGCGGTTGGTGCAATTTGCCTTAACCCTCACCCTCCTCTTGCTTAAAG
TAATCATTTGAATTTCCCTGCAGAGTGCAGACTGCATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCA
CTTGCTTCCTTCAGCACAGATATACTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTATGTACG
CATCAACTCATGACTGGTGACAAATGTTAACCCTTTGATTTCTGGAGAAAACTGCATAGAGTTCAATTGTGAATTTGTGA
CTGGTATAAAAAAAATTGTTTGCTTTGAGATCTATGCAGTTAATTTGGGTGAATTAATTAGTAAGCTTTTAGCCTTGGTT
ATTGTCATGGTGTTTGAGACAATCGTCCGTGTTGATGGTTATGTTGGACGTCATGTACAGACGAAAGCCAGTGTAATTGA
TTAGGGTAGCTAAAAACTGGAATTGATAGTGTTTACCATGTACTAGTATACTAGGAATTAAGTCTTGTGTTTTGAGTTTA
ATAATTCGGTTTGAATCTTAGCATCGGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis