Browse Element(s) Details


Os.54642.1.S1_at

Description gb:AK106350.1
DB_XREF= gi:32991559
TID=Os.54642.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H10, full insert sequence.
FL= gb:AK106350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g151609/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15130NANA2+8428944..8429273hypothetical protein
LOC_Os02g15140Os.55155.1.S1_at11/112+8433457..8436693expressed protein
LOC_Os02g15150Os.11489.4.S1_x_at2/112+8446600..8448583Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15160Os.54642.1.S1_at9/112+8453871..8455935F-box domain containing protein, expressed
LOC_Os02g15169Os.11489.3.S1_x_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.1.S1_a_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.4.S1_x_at7/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.15950.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169OsAffx.2517.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.1.S1_a_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.3.S1_x_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.4.S1_x_at7/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178OsAffx.2517.1.S1_at1/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15190NANA2+8470287..8473936retrotransposon protein, putative, unclassified
LOC_Os02g15200OsAffx.24266.1.S1_at11/112+8479274..8479606hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54642.1.S1_at--133--5771Chr02:8455070..8455094 (25 bp)
GACGATTTTGTGTCGTGCCGGCAGC
LOC_Os02g15160
Os.54642.1.S1_at--565--2491Chr02:8454937..8454961 (25 bp)
AACAGTTCAATTGGGCGAGCTTCTA
LOC_Os02g15160
Os.54642.1.S1_at--969--5911Chr02:8454921..8454945 (25 bp)
GAGCTTCTATCCTTGAGTCCAACAG
LOC_Os02g15160
Os.54642.1.S1_at--996--5151Chr02:8454893..8454917 (25 bp)
GCAAGGGCTCCCCAATCGTAATGGG
LOC_Os02g15160
Os.54642.1.S1_at--813--2972Chr08:776185..776323 (25 bp)
AATGGTCTCTTCATGGTCCATCTTG
NONE
Os.54642.1.S1_at--780--5211Chr02:8454785..8454809 (25 bp)
GAATTTTGAAAGACTGTGCTGCCCT
LOC_Os02g15160
Os.54642.1.S1_at--399--4771Chr02:8454768..8454792 (25 bp)
GCTGCCCTTTTCATTTATCCATTTG
LOC_Os02g15160
Os.54642.1.S1_at--698--1311NONE
AGATGGACAGTCTCCAGCTATGCCA
NONE
Os.54642.1.S1_at--481--1551NONE
AGCTATGCCAGTTTATAATCCCCTT
NONE
Os.54642.1.S1_at--928--3311Chr02:8453990..8454014 (25 bp)
CACATTTTCCATTGCACATCTTCTA
LOC_Os02g15160
Os.54642.1.S1_at--298--9831Chr02:8453949..8453973 (25 bp)
TAAATCCTCTATACCCATTTGTGGC
LOC_Os02g15160
Target Sequence 
GACGATTTTGTGTCGTGCCGGCAGCGGATGGTGGCCTCGGCTTCGTCTTCATGTCGGATTTGGGCTCACAATTTTGGAGG
AGGAAGAATGATTGGGATGATGATGTCTCTGAGTCTGGATGGGTGCTGGAGAAAACAGTTCAATTGGGCGAGCTTCTATC
CTTGAGTCCAACAGAGCGCAAGGGCTCCCCAATCGTAATGGGGTTTTCTGAGGACTATAATGTGATTTTCCTAAAGACAA
TTAATGGTCTCTTCATGGTCCATCTTGAGTCTATGGAGTTCAAGAGAATTTTGAAAGACTGTGCTGCCCTTTTCATTTAT
CCATTTGCAAGTGTTTACACTGCAGGCATGAGCATTGGTGATGGACATGATGAAGATGGACAGTCTCCAGCTATGCCAGT
TTATAATCCCCTTAACCCCACATTTTCCATTGCACATCTTCTATTTTGTTCGTATCAAATAAATCCTCTATACCCATTTG
TGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis