Browse Element(s) Details


Os.54644.1.S1_at

Description gb:AK106354.1
DB_XREF= gi:32991563
TID=Os.54644.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A03, full insert sequence.
FL= gb:AK106354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g500809/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50020OsAffx.15174.1.S1_at11/115+28592944..28594149expressed protein
LOC_Os05g50030NANA5+28598837..28600840expressed protein
LOC_Os05g50040Os.10827.1.S1_x_at11/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50040Os.46055.2.S1_x_at6/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50050NANA5+28606283..28606852hypothetical protein
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50080Os.54644.1.S1_at9/115+28618961..28621222Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g50090OsAffx.15175.2.A1_at10/115+28622415..28625251oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54644.1.S1_at--565--2771Chr05:28620696..28620720 (25 bp)
AAGACCCAGGTCTGCCGCATGGTGC
LOC_Os05g50080
Os.54644.1.S1_at--732--9231NONE
TCCTTCGGCCATTGATCATACGTAT
NONE
Os.54644.1.S1_at--786--411NONE
ATCATACGTATCAGTCCATCACCGA
NONE
Os.54644.1.S1_at--50--9771Chr05:28620853..28620877 (25 bp)
TAATCTCCTCTCTCTTTGATAATGA
LOC_Os05g50080
Os.54644.1.S1_at--584--10151Chr05:28620957..28620981 (25 bp)
TATACAATTAGCACACAGGCGAAAT
LOC_Os05g50080
Os.54644.1.S1_at--877--7671Chr05:28621042..28621066 (25 bp)
GGGTTATTTGTCCTATGGTTCATAT
LOC_Os05g50080
Os.54644.1.S1_at--473--7871Chr05:28621076..28621100 (25 bp)
GGTTATTATGATCTTGTTTCCTTGT
LOC_Os05g50080
Os.54644.1.S1_at--946--1751Chr05:28621115..28621139 (25 bp)
ACCGGGTGACAAATTGTTGGACTCA
LOC_Os05g50080
Os.54644.1.S1_at--987--6611Chr05:28621130..28621154 (25 bp)
GTTGGACTCATGTAAGTAAGGCTGT
LOC_Os05g50080
Os.54644.1.S1_at--211--8771Chr05:28621174..28621198 (25 bp)
TGTATGGAACACTTGTACGCTATGA
LOC_Os05g50080
Os.54644.1.S1_at--669--9951Chr05:28621189..28621213 (25 bp)
TACGCTATGAAAGTGCCTGAAGGCT
LOC_Os05g50080
Target Sequence 
AAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCAC
CCCCGCCGACCGCTTCTCCTTCGGCCATTGATCATACGTATCAGTCCATCACCGATCGCCACTCTCTCACTCCCTCCTAA
TCTCCTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGTATACTATTTAGTTGCA
CAAAGCAAATGAGAACTGAATTATACAATTAGCACACAGGCGAAATGTGAATACTAGAGAGTTATAGCTATTAAGTTGTG
GTCAGATATGTGAGTTATTACATTGGGGGTTATTTGTCCTATGGTTCATATTGTTATATAGGTTATTATGATCTTGTTTC
CTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCATGTAAGTAAGGCTGTTATTTGGATATCTGAATTATG
TATGGAACACTTGTACGCTATGAAAGTGCCTGAAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis