Browse Element(s) Details


Os.54646.1.S1_at

Description gb:AK106369.1
DB_XREF= gi:32991578
TID=Os.54646.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C05, full insert sequence.
FL= gb:AK106369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6788011/11membrane trafficking VPS53 family protein, putative, expressed
LOC_Os04g554101/11Glycerol kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0006810biological_processtransport
GO:0009617biological_processresponse to bacteria
GO:0010188biological_processresponse to microbial phytotoxin
GO:0019563biological_processglycerol catabolism
GO:0042742biological_processdefense response to bacteria
GO:0005739cellular_componentmitochondrion
GO:0004370molecular_functionglycerol kinase activity
GO:0005215molecular_functiontransporter activity
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54646.1.S1_at--442--4931Chr01:39776712..39776736 (25 bp)
GCTTGTTGTTCATAGTTTGCATCTC
LOC_Os01g67880
Os.54646.1.S1_at--250--6651Chr01:39776708..39776732 (25 bp)
GTTGTTCATAGTTTGCATCTCCTGC
LOC_Os01g67880
Os.54646.1.S1_at--829--4971Chr01:39776694..39776718 (25 bp)
GCATCTCCTGCAGTGCACATAGATA
LOC_Os01g67880
Os.54646.1.S1_at--812--251Chr01:39776670..39776694 (25 bp)
ATAGGAAATTTTCCCCCACACACAT
LOC_Os01g67880
Os.54646.1.S1_at--830--4171Chr01:39776656..39776680 (25 bp)
CCCACACACATAACCTTCGGTGTAT
LOC_Os01g67880
Os.54646.1.S1_at--1096--2631Chr01:39776645..39776669 (25 bp)
AACCTTCGGTGTATAATGAGCTAAC
LOC_Os01g67880
Os.54646.1.S1_at--141--351Chr01:39776633..39776657 (25 bp)
ATAATGAGCTAACATTTTGATCCCA
LOC_Os01g67880
Os.54646.1.S1_at--924--151Chr01:39776620..39776644 (25 bp)
ATTTTGATCCCATCTTGCGGAGTAC
LOC_Os01g67880
Os.54646.1.S1_at--751--4151Chr01:39776612..39776636 (25 bp)
CCCATCTTGCGGAGTACGAGTAATT
LOC_Os01g67880
Os.54646.1.S1_at--799--2311Chr01:39776573..39776597 (25 bp)
AAAGGTATCATCATAGTTTCAGTAA
LOC_Os01g67880
Os.54646.1.S1_at--818--9732Chr04:32739533..32739571 (24 bp)
TAATAGTAGGTTCTGTTGTTTTGTT
LOC_Os04g55410
Target Sequence 
GCTTGTTGTTCATAGTTTGCATCTCCTGCAGTGCACATAGATATAGGAAATTTTCCCCCACACACATAACCTTCGGTGTA
TAATGAGCTAACATTTTGATCCCATCTTGCGGAGTACGAGTAATTGAATTGTATTGGAAAAAGGTATCATCATAGTTTCA
GTAATAATAGTAGGTTCTGTTGTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis