Browse Element(s) Details


Os.54730.1.S1_at

Description gb:AK106620.1
DB_XREF= gi:32991829
TID=Os.54730.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-A11, full insert sequence.
FL= gb:AK106620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5514010/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55110Os.49788.1.S1_at10/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55110Os.49788.2.S1_x_at9/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55120Os.50909.2.S1_s_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55120Os.50909.1.S1_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed
LOC_Os03g55150Os.318.1.S1_at11/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55150Os.57450.1.S1_x_at1/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54730.1.S1_at--207--271Chr03:31324271..31324295 (25 bp)
ATATGTCATTGCCTGGGATGCTCAA
LOC_Os03g55140
Os.54730.1.S1_at--471--5411NONE
GAAGCTGCATGAGTTTCCTATCTAC
NONE
Os.54730.1.S1_at--600--451Chr03:31324788..31324812 (25 bp)
ATCTACTCAGGCAGTGTGGCATCGA
LOC_Os03g55140
Os.54730.1.S1_at--719--7531Chr03:31324803..31324827 (25 bp)
GTGGCATCGATAGCGTTCAATCATA
LOC_Os03g55140
Os.54730.1.S1_at--1137--6171Chr03:31325742..31325766 (25 bp)
GAGGAGCACCAGATATTTTTCGAAA
LOC_Os03g55140
Os.54730.1.S1_at--1081--7731Chr03:31325787..31325811 (25 bp)
GGTGTGCCTCACCTTTTAGCAGGAG
LOC_Os03g55140
Os.54730.1.S1_at--494--1031Chr03:31325810..31325834 (25 bp)
AGGTCCCTACCTTCATGTTGTACAA
LOC_Os03g55140
Os.54730.1.S1_at--36--1811Chr03:31325872..31325896 (25 bp)
ACCCCATCATTTTGTTAGCTGCGCA
LOC_Os03g55140
Os.54730.1.S1_at--691--3471Chr03:31325957..31325981 (25 bp)
CAGGTTTACCTATCTCAGCTTGTGT
LOC_Os03g55140
Os.54730.1.S1_at--277--6931Chr03:31325980..31326004 (25 bp)
GTAGGCATGTGATTGTTCTCAAGCA
LOC_Os03g55140
Os.54730.1.S1_at--490--8131Chr03:31326097..31326121 (25 bp)
GGACATTTGGACTTGGATCTGGTTA
LOC_Os03g55140
Target Sequence 
ATATGTCATTGCCTGGGATGCTCAATCAAAAAAGAAGCTGCATGAGTTTCCTATCTACTCAGGCAGTGTGGCATCGATAG
CGTTCAATCATAATGGTCAAATTTTTGCAGTTGCTTCAAACAGCAACTATCAAGAATCAGATAAAATGGTAGAGGAGCAC
CAGATATTTTTCGAAATGAAGCAGCACTTCTAAGGAGGTGTGCCTCACCTTTTAGCAGGAGGTCCCTACCTTCATGTTGT
ACAACTAATCGAGCTAAACTTATTCGTAGGTATTCTTTTCCACCCCATCATTTTGTTAGCTGCGCAGGATGTAGCTGAAC
GTTGTTGTATTGTTGTATGGGGAAGCATTATACTCATACAAATTAGCAGGTTTACCTATCTCAGCTTGTGTAGGCATGTG
ATTGTTCTCAAGCAAGGGCAGGGTAGATTTGTAGCGACTGTGTGTAAACTAGTACATCATGTACTGTATGTTCAAACTGC
TATTAGGAAATGTAACACATGTTATTGGACATTTGGACTTGGATCTGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis