Browse Element(s) Details


Os.54737.1.S1_at

Description gb:AK106637.1
DB_XREF= gi:32991846
TID=Os.54737.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D11, full insert sequence.
FL= gb:AK106637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0337011/11Structural maintenance of chromosome 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03310Os.46330.1.S1_at11/119+1611177..1614358Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os09g03310OsAffx.17910.1.S1_at1/119+1611177..1614358Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os09g03310Os.7867.1.S1_x_at1/119+1611177..1614358Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os09g03330NANA9+1616652..1617161transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g03340Os.27691.2.S1_x_at3/119+1620699..1621613retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03350OsAffx.7491.1.S1_x_at2/119+1622243..1625137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03350Os.27691.1.S1_x_at1/119+1622243..1625137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03360OsAffx.5954.5.S1_x_at5/119+1629869..1631312retrotransposon protein, putative, unclassified
LOC_Os09g03370Os.54737.1.S1_at11/119+1635020..1637966Structural maintenance of chromosome 6, putative, expressed
LOC_Os09g03380Os.5189.2.S1_at4/119+1658226..1663554transposon protein, putative, Mutator sub-class
LOC_Os09g03380OsAffx.17243.1.S1_at2/119+1658226..1663554transposon protein, putative, Mutator sub-class
LOC_Os09g03380Os.5189.1.S1_at1/119+1658226..1663554transposon protein, putative, Mutator sub-class
LOC_Os09g03380OsAffx.27824.1.S1_at1/119+1658226..1663554transposon protein, putative, Mutator sub-class
LOC_Os09g03380Os.52039.1.S1_at1/119+1658226..1663554transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007059biological_processchromosome segregation
GO:0005634cellular_componentnucleus
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54737.1.S1_at--696--4351Chr09:1637402..1637426 (25 bp)
CCAGCTCTGTTTTCTCAGGTCAAGA
LOC_Os09g03370
Os.54737.1.S1_at--135--8591Chr09:1637474..1637498 (25 bp)
TGGTCTTTACAGGTAGCTCCATCCA
LOC_Os09g03370
Os.54737.1.S1_at--923--4771Chr09:1637489..1637513 (25 bp)
GCTCCATCCACAAGGGCTTTTGAAG
LOC_Os09g03370
Os.54737.1.S1_at--267--3271Chr09:1637605..1637629 (25 bp)
CAAAGTTGACTTGGCTTACCGGCTA
LOC_Os09g03370
Os.54737.1.S1_at--1027--1751Chr09:1637622..1637646 (25 bp)
ACCGGCTATTCTCTACAGTACATGA
LOC_Os09g03370
Os.54737.1.S1_at--198--2111Chr09:1637641..1637665 (25 bp)
ACATGAGTGCTCGTCCTTGGGCAAA
LOC_Os09g03370
Os.54737.1.S1_at--180--8651Chr09:1637658..1637682 (25 bp)
TGGGCAAATTGCTCTGTCAGACTGT
LOC_Os09g03370
Os.54737.1.S1_at--430--2851Chr09:1637702..1637726 (25 bp)
AAGTGCACTTCTTCATGTGGTTTGC
LOC_Os09g03370
Os.54737.1.S1_at--112--1051Chr09:1637732..1637756 (25 bp)
AGGGTCTATGCCTGACGGTGGACAA
LOC_Os09g03370
Os.54737.1.S1_at--527--2351Chr09:1637811..1637835 (25 bp)
AAAGCTTTTGACTCGTTCTGTCTGA
LOC_Os09g03370
Os.54737.1.S1_at--809--8871Chr09:1637879..1637903 (25 bp)
TGATGTGTGAATGCGATCCTCCACT
LOC_Os09g03370
Target Sequence 
CCAGCTCTGTTTTCTCAGGTCAAGAAGGGTGCTCTGACGGTGAAGCAGGGGCTCCAGTGAAACTGATGGATGTGGTCTTT
ACAGGTAGCTCCATCCACAAGGGCTTTTGAAGAATATTTTCAGGTACGGGATGCAGTGCAGGAATTTTCACTGAGTGGTG
ATCAAGATGTGGTACGCTGGAAGTTGGAAGCTCATGGACACTTCAAAGTTGACTTGGCTTACCGGCTATTCTCTACAGTA
CATGAGTGCTCGTCCTTGGGCAAATTGCTCTGTCAGACTGTCACACAAGGGCACCATCAAAAGTGCACTTCTTCATGTGG
TTTGCAATCAAGGGTCTATGCCTGACGGTGGACAACCTGCTGAAGAGAGGCTGGTTTCATCAGCACTGCTGACCTCTGTG
CCAGTCAAAAAAGCTTTTGACTCGTTCTGTCTGATGTTGTGCTGTCTCGTGTGGAATGAAAGAAATAGCGGGGTGCTTGA
TGTGTGAATGCGATCCTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis