Browse Element(s) Details


Os.54767.1.S1_at

Description gb:AK106720.1
DB_XREF= gi:32991929
TID=Os.54767.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G07, full insert sequence.
FL= gb:AK106720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4789011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54767.1.S1_at--164--1471Chr02:29290892..29290916 (25 bp)
AGAAGTGGTCATCCCAATACAGGAA
LOC_Os02g47890
Os.54767.1.S1_at--213--6451Chr02:29290931..29290955 (25 bp)
GATCAGACTGTTGCACTTTGGGTAA
LOC_Os02g47890
Os.54767.1.S1_at--444--8531Chr02:29293117..29293141 (25 bp)
TGGACTGTCCTTTATCTACTCTAAA
LOC_Os02g47890
Os.54767.1.S1_at--885--5911Chr02:29293166..29293190 (25 bp)
GAGCTATATCATTGTTTTCTTCCCC
LOC_Os02g47890
Os.54767.1.S1_at--625--6951Chr02:29293212..29293236 (25 bp)
GTAGACATGCTACTTGTCCGTCCAA
LOC_Os02g47890
Os.54767.1.S1_at--18--8211Chr02:29293241..29293265 (25 bp)
GGAATATCCTCTGCCACTGGTTAAT
LOC_Os02g47890
Os.54767.1.S1_at--190--7971Chr02:29293298..29293322 (25 bp)
GGATCTGAGTATTCCTCGACGATTC
LOC_Os02g47890
Os.54767.1.S1_at--553--5051Chr02:29293328..29293352 (25 bp)
GCAGAAACTTGCTATTTCCATGCTA
LOC_Os02g47890
Os.54767.1.S1_at--54--5971Chr02:29293470..29293494 (25 bp)
GAGAATGCTCGGATGGCCACAACTT
LOC_Os02g47890
Os.54767.1.S1_at--172--10291Chr02:29293503..29293527 (25 bp)
TTTGCTCGGGAAGCATCTTGCTGTA
LOC_Os02g47890
Os.54767.1.S1_at--343--8511Chr02:29293608..29293632 (25 bp)
TGGAACCTCCTTTCAATTTTCTTGT
LOC_Os02g47890
Target Sequence 
AGAAGTGGTCATCCCAATACAGGAAATGTTGGTGCAGAAGATCAGACTGTTGCACTTTGGGTAAAGTGGAGAGGAAAATG
GCAAACTGGAATTCAATGCTTTAGAGTGGACTGTCCTTTATCTACTCTAAAGGCAAAACCAACACATGGCAGGAAGAGCT
ATATCATTGTTTTCTTCCCCCGTACAAGAACTTATTCTTGGGTAGACATGCTACTTGTCCGTCCAATTGAGGAATATCCT
CTGCCACTGGTTAATGGAACTCATCGCAAATGGCGAAAGCTAGTGAAGGATCTGAGTATTCCTCGACGATTCATCATGCA
GAAACTTGCTATTTCCATGCTAAATTTTAGTGACGAGCTTCATACAGAGGCTGTAGTTGAGAATGCTCGGATGGCCACAA
CTTGGAAGGAGTTTGCTCGGGAAGCATCTTGCTGTAGAGATTATACTGATCTTGGGAAGATGCTTGTCAAACTTCAAAAT
GTAAATCTAAGCACTCTATTCCTTAAAGATATATCATGGAACCTCCTTTCAATTTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis