Browse Element(s) Details


Os.5477.1.S1_at

Description gb:AK105099.1
DB_XREF= gi:32990308
TID=Os.5477.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C07, full insert sequence.
FL= gb:AK105099.1 gb:AK072765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1132011/11Heparanase-like protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004566molecular_functionbeta-glucuronidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5477.1.S1_at--423--10251Chr03:5804790..5804814 (25 bp)
TTTGGTCTGAATGCGCTCTATGGGA
LOC_Os03g11320
Os.5477.1.S1_at--365--6151Chr03:5804813..5804837 (25 bp)
GAGGTACAATGTCCGTCGTTCTTTC
LOC_Os03g11320
Os.5477.1.S1_at--363--1071Chr03:5804896..5804920 (25 bp)
AGGGATATCCAGTTGACTCATGGGA
LOC_Os03g11320
Os.5477.1.S1_at--260--8231Chr03:5805082..5805106 (25 bp)
GGCAAGAGTCGATGCTACACTGTAT
LOC_Os03g11320
Os.5477.1.S1_at--731--2491Chr03:5805141..5805165 (25 bp)
AACAGTTGTACAAGGCACCACTCTC
LOC_Os03g11320
Os.5477.1.S1_at--388--6771Chr03:5805178..5805202 (25 bp)
GTTAGCCCCTGGAGGATTCTTTGAT
LOC_Os03g11320
Os.5477.1.S1_at--1138--1091Chr03:5805207..5805231 (25 bp)
AGTGGTACACTCAGCTACTTCAGAC
LOC_Os03g11320
Os.5477.1.S1_at--48--4051Chr03:5805244..5805268 (25 bp)
CGTTGTCAGTGCTTTGACGCATCAT
LOC_Os03g11320
Os.5477.1.S1_at--225--8211Chr03:5805703..5805727 (25 bp)
GGAATGATGCCCACCTTATAAGGAA
LOC_Os03g11320
Os.5477.1.S1_at--703--8651Chr03:5805807..5805831 (25 bp)
TGGGCTTCTGCCTGGGTCAGCGAAA
LOC_Os03g11320
Os.5477.1.S1_at--1158--8471Chr03:5805851..5805875 (25 bp)
TGGCGGTGAACTTGTGTCAAACACT
LOC_Os03g11320
Target Sequence 
TTTGGTCTGAATGCGCTCTATGGGAGGTACAATGTCCGTCGTTCTTTCTGGGCTAGCAAATGGAACTCTACAAATGCATA
TAATTTTGTAAAATACACAATCTCAAAGGGATATCCAGTTGACTCATGGGAATATGGTAATGAACTGAGCGGGCATGGAA
TTGGGGCAAGAGTCGATGCTACACTGTATGGAAAAGATGCAATTGAACTTAAATCCATCTTTCAACAGTTGTACAAGGCA
CCACTCTCCCAGCCATCCCTGTTAGCCCCTGGAGGATTCTTTGATCAGCAGTGGTACACTCAGCTACTTCAGACTTCTGG
TCATGGCGTTGTCAGTGCTTTGACGCATCATATTTATAATCTTGGTGGAGGGAATGATGCCCACCTTATAAGGAAGATAT
TAGATCCAAAGTATTNAGATCGTTCAGAAGATACTTATAGGGATATGCAACTCNCCCTTCAAAGGCATGGAACATGGGCT
TCTGCCTGGGTCAGCGAAAGCGGAGGTGTATTCAACAATGGCGGTGAACTTGTGTCAAACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis