Browse Element(s) Details


Os.5477.1.S2_at

Description gb:AK072765.1
DB_XREF= gi:32982788
TID=Os.5477.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139K11, full insert sequence.
FL= gb:AK105099.1 gb:AK072765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1132011/11Heparanase-like protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004566molecular_functionbeta-glucuronidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5477.1.S2_at--491--5071Chr03:5806770..5806794 (25 bp)
GCACCGCTGGAACTCTCGGACGACG
LOC_Os03g11320
Os.5477.1.S2_at--55--8931Chr03:5806810..5806834 (25 bp)
TGAGCCCTGCGCTCGTTGCTGTCAA
LOC_Os03g11320
Os.5477.1.S2_at--260--10711Chr03:5806825..5806849 (25 bp)
TTGCTGTCAACTCGCCGGTGTACCT
LOC_Os03g11320
Os.5477.1.S2_at--830--7431Chr03:5806842..5806866 (25 bp)
GTGTACCTGGCACCGACATCGATCG
LOC_Os03g11320
Os.5477.1.S2_at--972--2091Chr03:5806857..5806881 (25 bp)
ACATCGATCGCCTTTGTAGTTCTTC
LOC_Os03g11320
Os.5477.1.S2_at--1090--6931Chr03:5806872..5806896 (25 bp)
GTAGTTCTTCCAATGTTTGAGGCCA
LOC_Os03g11320
Os.5477.1.S2_at--68--2951Chr03:5806896..5806920 (25 bp)
AAGGCCTGTTCTTGAGTGATCAATC
LOC_Os03g11320
Os.5477.1.S2_at--1062--6091Chr03:5806909..5806933 (25 bp)
GAGTGATCAATCTTGCCTTCTTGTT
LOC_Os03g11320
Os.5477.1.S2_at--698--4431Chr03:5806923..5806947 (25 bp)
GCCTTCTTGTTGAGTATTACGCCCT
LOC_Os03g11320
Os.5477.1.S2_at--123--6871Chr03:5806936..5806960 (25 bp)
GTATTACGCCCTTAGAATGTTCCAT
LOC_Os03g11320
Os.5477.1.S2_at--513--5131Chr03:5806983..5807007 (25 bp)
GCAAAACCCTTGGAATGTAAGCCTT
LOC_Os03g11320
Target Sequence 
GCACCGCTGGAACTCTCGGACGACGGCGGCGTTCCGGCCATGAGCCCTGCGCTCGTTGCTGTCAACTCGCCGGTGTACCT
GGCACCGACATCGATCGCCTTTGTAGTTCTTCCAATGTTTGAGGCCAAGGCCTGTTCTTGAGTGATCAATCTTGCCTTCT
TGTTGAGTATTACGCCCTTAGAATGTTCCATTTGTTCTTTTCTGGTTTAAATAGCAAAACCCTTGGAATGTAAGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5477.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis